Browse Element(s) Details


Os.18728.2.S1_x_at

Description gb:NM_193801.1
DB_XREF= gi:34914685
GEN=P0560B06.2
TID=Os.18728.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.2 (P0560B06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0560B06.2 (P0560B06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2684011/11RNA recognition motif family protein, expressed
LOC_Os01g2694011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26824OsAffx.21088.2.S1_s_at3/111+15164874..15166329hypothetical protein
LOC_Os01g26824OsAffx.21088.2.S1_x_at1/111+15164874..15166329hypothetical protein
LOC_Os01g26828Os.16815.1.S1_at1/111+15171443..15172386hypothetical protein
LOC_Os01g26832Os.12845.1.S1_at9/111+15172707..15177467expressed protein
LOC_Os01g26832Os.34167.2.S1_x_at1/111+15172707..15177467expressed protein
LOC_Os01g26836Os.35344.18.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836Os.35344.3.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836OsAffx.22940.5.S1_x_at3/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26840Os.18728.2.S1_x_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26840Os.18728.1.S1_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26844OsAffx.11217.1.S1_at9/111+15196428..15196694hypothetical protein
LOC_Os01g26848OsAffx.11218.1.S1_at8/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.8338.1.S1_x_at2/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.22240.1.S1_x_at1/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.10020.1.S1_x_at1/111+15199818..15201492hypothetical protein
LOC_Os01g26852Os.34167.3.S1_x_at10/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.2.S1_x_at9/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.2.S1_at9/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.1.S1_at9/111+15204518..15208140expressed protein
LOC_Os01g26856OsAffx.17848.1.S1_x_at8/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.1.S1_at7/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.5.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.4.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.2.S1_x_at3/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.3.S1_x_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856Os.54363.1.S1_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.11160.1.S1_s_at1/111+15210437..15220788Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18728.2.S1_x_at--182--6312Chr01:15337850..15337874 (25 bp)
GATGAAATTCCAAACTCTCCAGCGC
LOC_Os01g26940
Os.18728.2.S1_x_at--44--5352Chr01:15337817..15337841 (25 bp)
GAAGATGTCGACACCAGAGCGTTAC
LOC_Os01g26940
Os.18728.2.S1_x_at--706--1372Chr01:15337802..15337826 (25 bp)
AGAGCGTTACATGAGACTTCTCACG
LOC_Os01g26940
Os.18728.2.S1_x_at--523--6053Chr01:15336919..15336943 (25 bp)
GAGATTCACCAAGGAGGGACTCCCC
LOC_Os01g26940
Os.18728.2.S1_x_at--293--6952Chr01:15336727..15336751 (25 bp)
GTAGATCTCGGTCAAGGTCTCCTCA
LOC_Os01g26940
Os.18728.2.S1_x_at--389--7112Chr01:15336697..15336718 (22 bp)
GTCACCATAGGCGATCTCCAAGAAG
LOC_Os01g26940
Os.18728.2.S1_x_at--1100--2732Chr01:15336502..15336525 (24 bp)
AAGAAGGCATTCACCACGGCGCAGA
LOC_Os01g26940
Os.18728.2.S1_x_at--965--7112Chr01:15336464..15336488 (25 bp)
GTCATCGTCATCATTCACCTAGAAG
LOC_Os01g26940
Os.18728.2.S1_x_at--593--4472Chr01:15336397..15336421 (25 bp)
GCCTGGACGGAATCTGTTTGTTGCA
LOC_Os01g26940
Os.18728.2.S1_x_at--451--6672Chr01:15336378..15336402 (25 bp)
GTTGCAGGTTTTAGTTATGCCACCA
LOC_Os01g26940
Os.18728.2.S1_x_at--917--10412Chr01:15336364..15336388 (25 bp)
TTATGCCACCACTGAGCGAGATTTG
LOC_Os01g26940
Target Sequence 
GATGAAATTCCAAACTCTCCAGCGCTTGAGATGGAAGATGTCGACACCAGAGCGTTACATGAGACTTCTCACGATGAAAA
GTATGAGGCAGAGGATGATCAAATGAATGGAGAAGGGACTCACCAAGGAGGGCATCCCCATCAAGGAGAAGAGATTCACC
AAGGAGGGACTCCCCATCAAGGAGAAGGGACTCACCAAGGAGGTCCTCCCCATCAAGGAGAAGGGACTCACCAAGAAGGG
ACTCCCCATCAAGGAGGAGGGACTCCCCACGAAGGAGGCACAGGTCAAAATCAAGGTCACCTTCGAGGAAAACTGATGGC
TCTAGACATAGAAGGGAACATGGTAGATCTCGGTCAAGGTCTCCTCACTCAAGGAGTCACCATAGGCGATCTCCAAGAAG
GCATTCACCACGGCGCAGATCATCTCCTTCCAGTCATCGTCATCATTCACCTAGAAGGCCGTGGTCACCACCTGCCAACA
GGAAGACTGGATTGGGTAAGCCTGGACGGAATCTGTTTGTTGCAGGTTTTAGTTATGCCACCACTGAGCGAGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18728.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis