Browse Element(s) Details


OsAffx.11217.1.S1_at

Description tigr:9629.m02571
TID=OsAffx.11217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2695011/11hypothetical protein
LOC_Os01g268449/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11217.1.S1_at--179--5892Chr01:15341618..15341642 (25 bp)
GAGCGTTGAAGTTCCATCTGTCATG
LOC_Os01g26950
OsAffx.11217.1.S1_at--38--10691Chr01:15341629..15341653 (25 bp)
TTCCATCTGTCATGTATAGCGGGAT
LOC_Os01g26950
OsAffx.11217.1.S1_at--465--9992Chr01:15341645..15341669 (25 bp)
TAGCGGGATTGAGCCAATGCACAGC
LOC_Os01g26950
OsAffx.11217.1.S1_at--971--9012Chr01:15341662..15341686 (25 bp)
TGCACAGCGGGCAAATTGCCAAACG
LOC_Os01g26950
OsAffx.11217.1.S1_at--747--3972Chr01:15341669..15341693 (25 bp)
CGGGCAAATTGCCAAACGGCAGCAG
LOC_Os01g26950
OsAffx.11217.1.S1_at--598--3411Chr01:15341691..15341715 (25 bp)
CAGCACCGCAGTGGGCATTAGGCAA
LOC_Os01g26950
OsAffx.11217.1.S1_at--810--152Chr01:15341707..15341731 (25 bp)
ATTAGGCAAGGCAGTGACGCCGCAC
LOC_Os01g26950
OsAffx.11217.1.S1_at--734--8932Chr01:15341721..15341745 (25 bp)
TGACGCCGCACCTAGGGTGAATCAA
LOC_Os01g26950
OsAffx.11217.1.S1_at--689--10072Chr01:15341733..15341757 (25 bp)
TAGGGTGAATCAACAAGCGGCAGTG
LOC_Os01g26950
OsAffx.11217.1.S1_at--693--3832Chr01:15341788..15341812 (25 bp)
CTGCGGCTGCGGTACAGGCACATGC
LOC_Os01g26950
OsAffx.11217.1.S1_at--468--4652Chr01:15341796..15341820 (25 bp)
GCGGTACAGGCACATGCGAGTCATT
LOC_Os01g26950
Target Sequence 
GAGCGTTGAAGTTCCATCTGTCATGTATAGCGGGATTGAGCCAATGCACAGCGGGCAAATTGCCAAACGGCAGCAGCACC
GCAGTGGGCATTAGGCAAGGCAGTGACGCCGCACCTAGGGTGAATCAACAAGCGGCAGTGGCACAGCAGGTGCTGCGGCT
GCGGCTGCGGCTGCGGCTGCGGTACAGGCACATGCGAGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis