Browse Element(s) Details


Os.12845.1.S1_at

Description gb:AK119785.1
DB_XREF= gi:37989408
TID=Os.12845.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F07, full insert sequence.
FL= gb:AK105060.1 gb:AK101540.1 gb:AK068655.1 gb:AK119785.1 gb:AK101542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g268329/11expressed protein
LOC_Os01g269205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26816NANA1+15148704..15148985hypothetical protein
LOC_Os01g26820OsAffx.30226.1.S1_at1/111+15151549..15152459hypothetical protein
LOC_Os01g26820OsAffx.30226.1.S1_x_at1/111+15151549..15152459hypothetical protein
LOC_Os01g26824OsAffx.21088.2.S1_s_at3/111+15164874..15166329hypothetical protein
LOC_Os01g26824OsAffx.21088.2.S1_x_at1/111+15164874..15166329hypothetical protein
LOC_Os01g26828Os.16815.1.S1_at1/111+15171443..15172386hypothetical protein
LOC_Os01g26832Os.12845.1.S1_at9/111+15172707..15177467expressed protein
LOC_Os01g26832Os.34167.2.S1_x_at1/111+15172707..15177467expressed protein
LOC_Os01g26836Os.35344.18.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836Os.35344.3.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836OsAffx.22940.5.S1_x_at3/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26840Os.18728.2.S1_x_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26840Os.18728.1.S1_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26844OsAffx.11217.1.S1_at9/111+15196428..15196694hypothetical protein
LOC_Os01g26848OsAffx.11218.1.S1_at8/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.8338.1.S1_x_at2/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.22240.1.S1_x_at1/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.10020.1.S1_x_at1/111+15199818..15201492hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12845.1.S1_at--44--9352Chr01:15320759..15320783 (25 bp)
TCGAATCTTTTTGGGCTGTGACAAT
LOC_Os01g26920
Os.12845.1.S1_at--307--5612Chr01:15320744..15320764 (21 bp)
GACAATAAGCCTCTTTCCAGGCAAG
LOC_Os01g26920
Os.12845.1.S1_at--646--9912Chr01:15320446..15320466 (21 bp)
TACTGGTACAGATGGTCCACTGGGT
LOC_Os01g26920
Os.12845.1.S1_at--447--10852Chr01:15320383..15320407 (25 bp)
TTGGGAGCCCAAGTATCCAAGCTTC
LOC_Os01g26920
Os.12845.1.S1_at--638--2132Chr01:15320358..15320382 (25 bp)
ACAGAATTCCTTGGTCTTGACAGTT
LOC_Os01g26920
Os.12845.1.S1_at--7--1252Chr01:15320337..15320361 (25 bp)
AGTTGACATGCTTGTGTATGCTTGC
NONE
Os.12845.1.S1_at--284--6892Chr01:15320220..15320244 (25 bp)
GTATATCTTGTTCTGCTATGTGCTT
NONE
Os.12845.1.S1_at--562--6632Chr01:15320168..15320192 (25 bp)
GTTGTACAATGGTTTCGGCCAGAGA
NONE
Os.12845.1.S1_at--989--1332Chr01:15320148..15320172 (25 bp)
AGAGAAATATTTCCACCCGTGTCAT
NONE
Os.12845.1.S1_at--863--8592Chr01:15320110..15320134 (25 bp)
TGGTCCGTCCAACATCTATTTGTCT
NONE
Os.12845.1.S1_at--145--212Chr01:15320093..15320117 (25 bp)
ATTTGTCTCTTTGTAACCACATTTG
NONE
Target Sequence 
TCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTG
ACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATT
GGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATC
TTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGCGTTTTTTTTAAAAGACGTAA
ATACTGTATATCTTGTTCTGCTATGTGCTTATATCAGTTAGCGTTNCTAAGTCTGACCNGTTGTACAATGGTTTCGGCCA
GAGAAATATTTCCACCCGTGTCATGTTGGCCTCGTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis