Browse Element(s) Details


Os.15888.1.A1_at

Description gb:AK060679.1
DB_XREF= gi:32970697
TID=Os.15888.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423A12.19 (P0423A12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C10, full insert sequence.
FL= gb:AK072525.1 gb:AK060679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7078011/11SVP1-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15888.1.A1_at--527--10471Chr01:41294682..41294706 (25 bp)
TTAACCACGAATGATAAGCCCCTGC
LOC_Os01g70780
Os.15888.1.A1_at--1136--3811Chr01:41294654..41294678 (25 bp)
CTCCAGATCCTGATGTTCCACATAT
LOC_Os01g70780
Os.15888.1.A1_at--89--7271Chr01:41294627..41294651 (25 bp)
GTCCATCTCTTTCTTTCATTAAGGG
LOC_Os01g70780
Os.15888.1.A1_at--33--3331Chr01:41294035..41294059 (25 bp)
CACTCGGAGTGGTCTGTAGCTCAGT
LOC_Os01g70780
Os.15888.1.A1_at--74--6971Chr01:41294020..41294044 (25 bp)
GTAGCTCAGTTCAGACTCCACGAGG
LOC_Os01g70780
Os.15888.1.A1_at--916--5231Chr01:41293961..41293985 (25 bp)
GAATACCGTGGCAGTTGTTGGCATG
LOC_Os01g70780
Os.15888.1.A1_at--519--851Chr01:41293848..41293959 (25 bp)
ATGGAAGCTTCTACCGATGCCAGTT
LOC_Os01g70780
Os.15888.1.A1_at--42--591Chr01:41293832..41293856 (25 bp)
ATGCCAGTTCGACCCTGTAAACGGA
LOC_Os01g70780
Os.15888.1.A1_at--550--5071Chr01:41293796..41293820 (25 bp)
GCAGCTGGAGTGCTACAATTTCCTA
LOC_Os01g70780
Os.15888.1.A1_at--730--3231Chr01:41293739..41293763 (25 bp)
CAAGCAGCGGATCTGTTTTTCCTCC
LOC_Os01g70780
Os.15888.1.A1_at--761--7911Chr01:41293704..41293728 (25 bp)
GGTTGTACAGTATCTGTGTGCCCTC
LOC_Os01g70780
Target Sequence 
TTAACCACGAATGATAAGCCCCTGCCTGCTCCAGATCCTGATGTTCCACATATCAGTCCATCTCTTTCTTTCATTAAGGG
TGTACTACCAAAATATTTCCACTCGGAGTGGTCTGTAGCTCAGTTCAGACTCCACGAGGGGGAGCAATATATTGTTGCAT
TTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGCTTCTACCGATGCCAGTTCGACCCTGTAAACGGA
GGAGAGATGCTGCAGCTGGAGTGCTACAATTTCCTAAAACCATCATCGGATCAACCNCAGTAGCAGCCCAAGCAGCGGAT
CTGTTTTTCCTCCCTTGTATCGGGGTTGTACAGTATCTGTGTGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15888.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis