Browse Element(s) Details


Os.11148.1.S1_at

Description gb:AK101396.1
DB_XREF= gi:32986605
TID=Os.11148.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial carrier protein (P0423A12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037B09, full insert sequence.
FL= gb:AK101396.1 gb:AK069988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7080011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11148.1.S1_at--934--3671Chr01:41309426..41309450 (25 bp)
CTTTGGTGAAATCGGCTCCTGCTGG
LOC_Os01g70800
Os.11148.1.S1_at--252--4731Chr01:41309446..41309470 (25 bp)
GCTGGTGCCGTGACATTTGTGGCAT
LOC_Os01g70800
Os.11148.1.S1_at--169--3471Chr01:41310015..41310039 (25 bp)
CAGTGTCCACTCTTAATTGTTTTGT
LOC_Os01g70800
Os.11148.1.S1_at--388--1131Chr01:41310063..41310087 (25 bp)
AGTGCATACAATCCCTTGAGAGCTG
LOC_Os01g70800
Os.11148.1.S1_at--704--10011Chr01:41310107..41310131 (25 bp)
TAGAATTAGCTACTCTTGTCATTTC
LOC_Os01g70800
Os.11148.1.S1_at--666--8931Chr01:41310150..41310174 (25 bp)
TGACCTGTGTTGTTGCATTCGTTGA
LOC_Os01g70800
Os.11148.1.S1_at--408--8071Chr01:41310241..41310265 (25 bp)
GGAGCGGCAGGCATTTTTGTTAAGA
LOC_Os01g70800
Os.11148.1.S1_at--558--231Chr01:41310268..41310292 (25 bp)
ATATTATCTCACTCCTATATGTCCC
LOC_Os01g70800
Os.11148.1.S1_at--69--7251Chr01:41310288..41310312 (25 bp)
GTCCCTCACTCACATAATGCAGTTA
LOC_Os01g70800
Os.11148.1.S1_at--857--851Chr01:41310351..41310375 (25 bp)
ATGGCTCATGCAAACTGTAACTCTG
LOC_Os01g70800
Os.11148.1.S1_at--632--5571Chr01:41310389..41310413 (25 bp)
GAAAGTCGTTATTTGCTTCGTGATG
LOC_Os01g70800
Target Sequence 
CTTTGGTGAAATCGGCTCCTGCTGGTGCCGTGACATTTGTGGCATATGAATACATCTCAGACTGGNTAGNGNNNANANNN
NNNNNNGAGTGAGTTCTTGGATGAAGGAGCCATTGAGAGATACAACATACAATGATGAGAGAACAGTGTCCACTCTTAAT
TGTTTTGTGACCGCAAGGTCGAAAGTTAAAAAGTGCATACAATCCCTTGAGAGCTGATACTTGGAAAGCCTTGCATAGAA
TTAGCTACTCTTGTCATTTCTCTGCCTTTTTGCCCCATTGACCTGTGTTGTTGCATTCGTTGAGATGTAACAGTGAGGAT
GAGTAAAACTAAGGAAAGTGTAGAGCTTGTGACGCTTGATGAAGGCCGGGGAGCGGCAGGCATTTTTGTTAAGATGATAT
TATCTCACTCCTATATGTCCCTCACTCACATAATGCAGTTAATGTGAACTGTTACATGATTCGTAGCNTATCTGCCTTTA
TGGCTCATGCAAACTGTAACTCTGGGAGACTGGGACTGAAAGTCGTTATTTGCTTCGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis