Browse Element(s) Details


Os.33625.4.S1_at

Description gb:Z34270.1
DB_XREF= gi:498746
TID=Os.33625.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) pir7b protein (Pseudomonas inducible protein) (P0423A12.26), mRNA
DEF=O.sativa (cv. Nohrin) Pir7b mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7085011/11Esterase PIR7B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative
LOC_Os01g70890OsAffx.23994.1.S1_x_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70890OsAffx.23994.1.S1_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33625.4.S1_at--93--10811Chr01:41331828..41331852 (25 bp)
TTGGGACCAACCTTCTTGGCACAAA
LOC_Os01g70850
Os.33625.4.S1_at--19--9911Chr01:41331801..41331825 (25 bp)
TACTACCAGCAAAGTCCAGCAGAGG
LOC_Os01g70850
Os.33625.4.S1_at--982--5991Chr01:41331530..41331554 (25 bp)
GAGACCTGGCAATCAGTTCATGGAT
LOC_Os01g70850
Os.33625.4.S1_at--192--1051Chr01:41331447..41331471 (25 bp)
AGGTGTACGTGATCGCCAAGGCTGA
LOC_Os01g70850
Os.33625.4.S1_at--776--8951Chr01:41331425..41331449 (25 bp)
TGACAGCTCCAGCACCGAGGAGATG
LOC_Os01g70850
Os.33625.4.S1_at--777--7111Chr01:41331334..41331358 (25 bp)
GTCATGAACTCCAAGCCCAGGGAAC
LOC_Os01g70850
Os.33625.4.S1_at--1134--7611Chr01:41331315..41331339 (25 bp)
GGGAACTCTGCGACATTCTGATCAA
LOC_Os01g70850
Os.33625.4.S1_at--348--3091Chr01:41331251..41331275 (25 bp)
AATAATCAGTGCTTCTTCGTCATGA
LOC_Os01g70850
Os.33625.4.S1_at--290--671Chr01:41331230..41331254 (25 bp)
ATGAAGCCTACTTACAGTCCATCGC
LOC_Os01g70850
Os.33625.4.S1_at--1105--5331Chr01:41331188..41331212 (25 bp)
GAAGTTTGGTTCTCATTGCTTTGTT
LOC_Os01g70850
Os.33625.4.S1_at--582--10731Chr01:41331173..41331197 (25 bp)
TTGCTTTGTTTGATCTTGTGTGCCA
LOC_Os01g70850
Target Sequence 
TTGGGACCAACCTTCTTGGCACAAAAATACTACCAGCAAAGTCCAGCAGAGGATCTGGCACTGGCGAAGATGCTGGTGAG
ACCTGGCAATCAGTTCATGGATGATCCGGTGATGAAAGATGAGAGCTTGCTCACCAATGGCAACTATGGATCGGTGAAGA
AGGTGTACGTGATCGCCAAGGCTGACAGCTCCAGCACCGAGGAGATGCAGCGGTGGATGGTGGCGATGAGCCCTGGCACG
GACGTCGAGGAGATCGCCGGAGCTGACCACGCCGTCATGAACTCCAAGCCCAGGGAACTCTGCGACATTCTGATCAAGAT
AGCCAACAAATACGAGTAGAAAAATGCCAGTTTGGAAATAATCAGTGCTTCTTCGTCATGAAGCCTACTTACAGTCCATC
GCTACAAGTATAAATAATAGAAGTTTGGTTCTCATTGCTTTGTTTGATCTTGTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33625.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis