Browse Element(s) Details


Os.33625.3.S1_at

Description gb:AK072603.1
DB_XREF= gi:32982626
TID=Os.33625.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) pir7b protein (Pseudomonas inducible protein) (P0423A12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131L10, full insert sequence.
FL= gb:AK072603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7084011/11Esterase PIR7B, putative, expressed
LOC_Os01g708301/11esterase PIR7A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33625.3.S1_at--887--9591Chr01:41330037..41330147 (25 bp)
TCATCCCCGAGTTGATAAGGGAAAA
LOC_Os01g70840
Os.33625.3.S1_at--675--2351Chr01:41330014..41330038 (25 bp)
AAAGCTCCCAAAGATATGCTCCTGG
LOC_Os01g70840
Os.33625.3.S1_at--541--3811Chr01:41329996..41330020 (25 bp)
CTCCTGGATAGCAAAATGATACCGA
LOC_Os01g70840
Os.33625.3.S1_at--221--8831Chr01:41329980..41330004 (25 bp)
TGATACCGATCAACAACAAACAAGG
LOC_Os01g70840
Os.33625.3.S1_at--45--951Chr01:41329952..41329976 (25 bp)
AGGAACTGCAATCCTCCTAGGCCCA
LOC_Os01g70840
Os.33625.3.S1_at--184--4291Chr01:41329937..41329961 (25 bp)
CCTAGGCCCAAATTTCTTGGCGGAG
LOC_Os01g70840
Os.33625.3.S1_at--990--3591Chr01:41329922..41329946 (25 bp)
CTTGGCGGAGAAGGGTTATCCACTA
LOC_Os01g70840
Os.33625.3.S1_at--169--7892Chr01:41329909..41329933 (25 bp)
GGTTATCCACTAAGTCCAGCTGAGG
LOC_Os01g70840
Os.33625.3.S1_at--922--2851Chr01:41329778..41329922 (25 bp)
AAGTCCAGCTGAGGACTTGACACTG
LOC_Os01g70840
Os.33625.3.S1_at--491--8851Chr01:41329451..41329475 (25 bp)
TGATGAATAAATCCTGTCCAGAGCT
LOC_Os01g70840
Os.33625.3.S1_at--502--9271Chr01:41329440..41329464 (25 bp)
TCCTGTCCAGAGCTAATGCAGGCTC
LOC_Os01g70840
Target Sequence 
TCATCCCCGAGTTGATAAGGGAAAAAGCTCCCAAAGATATGCTCCTGGATAGCAAAATGATACCGATCAACAACAAACAA
GGTCCAGGAACTGCAATCCTCCTAGGCCCAAATTTCTTGGCGGAGAAGGGTTATCCACTAAGTCCAGCTGAGGACTTGAC
ACTGGCGAAATTATTGGTGAGACCTACCAGCCAGTTCGTGGATGATCCAACGATGAAGGATGACAGGCTGCTTACCAGTG
CCAACTACGGTTCGGTAAAGAGGGTGTGCCTGATGGCCATGGAGGATGACTTGAAGGAGGTGCACCGTTACATGATTACG
TTGAGCCCGGGCGTGGAAGTCGAAGAGATTGCCGGGGCCGACCACGCCGTCATGTGCTCCAGGCCGAGGGAGCTCTCTGA
TCTTCTTGCTAAGATAGGTAGCAAGTATGACTAATTGATTGGTTAGAAATTGGGCAAGAAAAAAATGATGAATAAATCCT
GTCCAGAGCTAATGCAGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33625.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis