Browse Element(s) Details


OsAffx.24752.1.S1_at

Description tigr:9630.m04499
TID=OsAffx.24752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectinesterase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4631011/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24752.1.S1_at--483--4411Chr02:28225565..28225589 (25 bp)
GCCACCGTTGATGTTTTTGCTACAG
LOC_Os02g46310
OsAffx.24752.1.S1_at--39--3691Chr02:28225884..28225908 (25 bp)
CTTTGGCAACGGCAGATCATTTTAT
LOC_Os02g46310
OsAffx.24752.1.S1_at--646--5611Chr02:28226096..28226120 (25 bp)
GACACGGGCTTTGCCTTTGTCAATT
LOC_Os02g46310
OsAffx.24752.1.S1_at--482--10251Chr02:28226111..28226135 (25 bp)
TTTGTCAATTGTCGCATCACCGGCA
LOC_Os02g46310
OsAffx.24752.1.S1_at--27--391Chr02:28226126..28226150 (25 bp)
ATCACCGGCAGTGGGCTGATTTTAT
LOC_Os02g46310
OsAffx.24752.1.S1_at--1106--5651Chr02:28226198..28226222 (25 bp)
GACATGCCCGGTATCATTGTGCCGA
LOC_Os02g46310
OsAffx.24752.1.S1_at--577--6331Chr02:28226254..28226365 (25 bp)
GATGCGTACCACGATGTTCTACGGT
LOC_Os02g46310
OsAffx.24752.1.S1_at--500--4551Chr02:28226388..28226412 (25 bp)
GCGCCAACATGACCGGTAGAGTACC
LOC_Os02g46310
OsAffx.24752.1.S1_at--657--6931Chr02:28226403..28226427 (25 bp)
GTAGAGTACCATATGCCAAACCGCT
LOC_Os02g46310
OsAffx.24752.1.S1_at--829--891Chr02:28226439..28226463 (25 bp)
AGGCGCAGATATACCTGGACGCTTC
LOC_Os02g46310
OsAffx.24752.1.S1_at--699--5791Chr02:28226456..28226480 (25 bp)
GACGCTTCCTACGTGGACGCGGATG
LOC_Os02g46310
Target Sequence 
GCCACCGTTGATGTTTTTGCTACAGGATTTGTAACGAACAACATCAGTTTTAAGAATGCATCCCCAGCTCCAAAGCCGGG
TGATCGTGACGGACAGGCTGTAGCAATTAGAGTTTCAGGTTCGATTGATTTTATCTTTGGCAACGGCAGATCATTTTATG
AGAAGTGTATTTTGAACTCGGTAGCTACAAGCGATGGGATCAACGGTGCAATATGTGCACAAGGCCGTGAATACGCGGCC
GATGACACGGGCTTTGCCTTTGTCAATTGTCGCATCACCGGCAGTGGGCTGATTTTATTGGGCCGTGCATGGAGGCCCTA
CTCCCGCGTGGTCTTCGCGCACACGGACATGCCCGGTATCATTGTGCCGAGGGTTGGAGCGACTGGGACGACCCGCAACG
AGATGCGTACCACGATGTTCTACGGTGAATACATGTGTACGGGTGTGGGCGCCAACATGACCGGTAGAGTACCATATGCC
AAACCGCTGACGGAGCAGCAGGCGCAGATATACCTGGACGCTTCCTACGTGGACGCGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis