Browse Element(s) Details


OsAffx.12519.1.S1_at

Description tigr:9630.m04501
TID=OsAffx.12519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4633011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12519.1.S1_at--694--3271Chr02:28235146..28235170 (25 bp)
CACATATTTAGACCGCGGAACAAGC
LOC_Os02g46330
OsAffx.12519.1.S1_at--264--9991Chr02:28235152..28235176 (25 bp)
TTTAGACCGCGGAACAAGCGGGTTG
LOC_Os02g46330
OsAffx.12519.1.S1_at--90--2211Chr02:28235165..28235189 (25 bp)
ACAAGCGGGTTGGTAGTGCCGCCAC
LOC_Os02g46330
OsAffx.12519.1.S1_at--727--7831Chr02:28235176..28235200 (25 bp)
GGTAGTGCCGCCACGACTCGTGCAA
LOC_Os02g46330
OsAffx.12519.1.S1_at--637--4411Chr02:28235185..28235209 (25 bp)
GCCACGACTCGTGCAAGCAACGATG
LOC_Os02g46330
OsAffx.12519.1.S1_at--332--1491Chr02:28235200..28235224 (25 bp)
AGCAACGATGAAACAGCGGGCCGGA
LOC_Os02g46330
OsAffx.12519.1.S1_at--175--2591Chr02:28235203..28235227 (25 bp)
AACGATGAAACAGCGGGCCGGAGAT
LOC_Os02g46330
OsAffx.12519.1.S1_at--437--1691Chr02:28235236..28235260 (25 bp)
AGCCATGCATGCATAAGCATCAGCA
LOC_Os02g46330
OsAffx.12519.1.S1_at--1066--9051Chr02:28235241..28235265 (25 bp)
TGCATGCATAAGCATCAGCATGGAC
LOC_Os02g46330
OsAffx.12519.1.S1_at--753--831Chr02:28235260..28235284 (25 bp)
ATGGACCAGACCGATGCAAACTGGG
LOC_Os02g46330
OsAffx.12519.1.S1_at--44--1771Chr02:28235269..28235293 (25 bp)
ACCGATGCAAACTGGGAAAGCGGCT
LOC_Os02g46330
Target Sequence 
CACATATTTAGACCGCGGAACAAGCGGGTTGGTAGTGCCGCCACGACTCGTGCAAGCAACGATGAAACAGCGGGCCGGAG
ATATGGAAGCAGCCATGCATGCATAAGCATCAGCATGGACCAGACCGATGCAAACTGGGAAAGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis