Browse Element(s) Details


OsAffx.12518.1.S1_at

Description tigr:9630.m04496
TID=OsAffx.12518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46240OsAffx.22848.3.S1_x_at2/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46240OsAffx.22848.4.S1_x_at1/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46250NANA2+28197633..28198339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12518.1.S1_at--41--7071Chr02:28216597..28216621 (25 bp)
GTAAGAGCATGCCACTTGTCGTCGT
LOC_Os02g46280
OsAffx.12518.1.S1_at--502--7751Chr02:28216649..28216673 (25 bp)
GGTGTTGGTGCTCCTTCGTTGTCCT
LOC_Os02g46280
OsAffx.12518.1.S1_at--324--10631Chr02:28216663..28216687 (25 bp)
TTCGTTGTCCTCATGGTGTTCCTGG
LOC_Os02g46280
OsAffx.12518.1.S1_at--729--3271Chr02:28216729..28216753 (25 bp)
CAAAGCGGCACAACACAAGGTTAGC
LOC_Os02g46280
OsAffx.12518.1.S1_at--420--2471Chr02:28216740..28216764 (25 bp)
AACACAAGGTTAGCTTCGATCCTGG
LOC_Os02g46280
OsAffx.12518.1.S1_at--410--3871Chr02:28216772..28216796 (25 bp)
CTGTTCTACCTGGACGTCGTTAAGC
LOC_Os02g46280
OsAffx.12518.1.S1_at--375--5871Chr02:28216826..28216850 (25 bp)
GAGCGGTGTTGTAAAGACGTTGCCA
LOC_Os02g46280
OsAffx.12518.1.S1_at--727--5611Chr02:28216892..28216916 (25 bp)
GACAACGGAGTTGCTATGTCCGACA
LOC_Os02g46280
OsAffx.12518.1.S1_at--503--6051Chr02:28216899..28216923 (25 bp)
GAGTTGCTATGTCCGACAATGGCAC
LOC_Os02g46280
OsAffx.12518.1.S1_at--270--5611Chr02:28216913..28216937 (25 bp)
GACAATGGCACCAAGCCGTCGACTT
LOC_Os02g46280
OsAffx.12518.1.S1_at--545--2651Chr02:28216925..28216949 (25 bp)
AAGCCGTCGACTTTGTTCCATTCCT
LOC_Os02g46280
Target Sequence 
GTAAGAGCATGCCACTTGTCGTCGTCGCCACGGGCGTCGCGCTGTCCGACGCGGTGTTGGTGCTCCTTCGTTGTCCTCAT
GGTGTTCCTGGCGTGCGGGAGGTTCCAGAGGAGGGCCATGCCGGGTGCTTACCAAAGCGGCACAACACAAGGTTAGCTTC
GATCCTGGCCCGGACCTGTTCTACCTGGACGTCGTTAAGCCGTACGTCGAGGCCGACCATGGCGACGACGAGCGGTGTTG
TAAAGACGTTGCCAGAGTTGGTCGGGCTGAGGAAAGAGCCCAGGTGGGAGGATAAGACAACGGAGTTGCTATGTCCGACA
ATGGCACCAAGCCGTCGACTTTGTTCCATTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis