Browse Element(s) Details


OsAffx.12520.1.S1_s_at

Description tigr:9630.m04502
TID=OsAffx.12520.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4634011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12520.1.S1_s_at--1045--4091Chr02:28241219..28241243 (25 bp)
CGACTCGCGGAGCAGCAACAACTCG
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--519--4151Chr02:28241394..28241418 (25 bp)
GCCAAGTCAACGACCGGTTCCGTGA
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--555--7731Chr02:28241545..28241569 (25 bp)
GGTGGAGCCAGAGCCACCACAGCAA
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--117--3311Chr02:28241562..28241586 (25 bp)
CACAGCAACCGGCAGGAGGACTCGT
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--104--3411Chr02:28241574..28241598 (25 bp)
CAGGAGGACTCGTGGCGGTGGGACC
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--305--1871Chr02:28241641..28241665 (25 bp)
ACGAGCCGGGCTTCGTCACGCTGTA
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--295--9691Chr02:28241656..28241680 (25 bp)
TCACGCTGTACCGTTGGATCGTAGG
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--175--6971Chr02:28241662..28241686 (25 bp)
TGTACCGTTGGATCGTAGGCGTATA
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--625--511Chr02:28241673..28241697 (25 bp)
ATCGTAGGCGTATAGAACTAGCCCC
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--978--4011Chr02:28241681..28241705 (25 bp)
CGTATAGAACTAGCCCCCTGTAATT
LOC_Os02g46340
OsAffx.12520.1.S1_s_at--1151--8731Chr02:28241699..28241723 (25 bp)
TGTAATTACAGGACCTCACGAGGTT
LOC_Os02g46340
Target Sequence 
CGACTCGCGGAGCAGCAACAACTCGAGGAGCTTCCGCGTCGAGATCGGCAGCATCAGCAACCGCCGCTCCTCCGCCGCGG
CCGACGACCGGCGCACCTACTCGCTCGGCTCCTTCGACTACCGCGTGGACGAGGAGGTGGAGGCCGTCGTGTCCCGCATC
GCGCGCCCCGCGGCGGCCAAGTCAACGACCGGTTCCGTGACGCCGGCCCCCGGCGAGGCGCTGGCGGAGGCGGCGGGGTC
GCGGGGATGGCTGCGCGAGTACGTGGACCGCCTCGCCTCCTCCGCCTCGTCCCTCTCCGGCCGGTGGAGCGGGCGGTGGA
GCGCGCGGTGGAGCCAGAGCCACCACAGCAACCGGCAGGAGGACTCGTGGCGGTGGGACCCGGAGGCGGCGGTGATGTCG
GCGCCGCGCGGGGTGGACGACGACGAGCCGGGCTTCGTCACGCTGTACCGTTGGATCGTAGGCGTATAGAACTAGCCCCC
TGTAATTACAGGACCTCACGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12520.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis