Browse Element(s) Details


Os.34151.1.S1_a_at

Description gb:AK065336.1
DB_XREF= gi:32975354
TID=Os.34151.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O22, full insert sequence.
FL= gb:AK065336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4638011/11purine permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005345molecular_functionpurine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34151.1.S1_a_at--319--2691Chr02:28262472..28262496 (25 bp)
AAGCTGCAACTTCGTCAACTCATGA
LOC_Os02g46380
Os.34151.1.S1_a_at--385--6971Chr02:28262498..28262522 (25 bp)
GTACCTATACAGAACTCTCCTGTCA
LOC_Os02g46380
Os.34151.1.S1_a_at--1069--1211Chr02:28262551..28262575 (25 bp)
AGTTAACATGTTCTTCCTCATTGCC
LOC_Os02g46380
Os.34151.1.S1_a_at--1123--9511Chr02:28262588..28262612 (25 bp)
TCTACACTTCTTGGGAGGTTCTACT
LOC_Os02g46380
Os.34151.1.S1_a_at--149--7891Chr02:28262604..28262628 (25 bp)
GGTTCTACTACAATCAAGGCGGCAA
LOC_Os02g46380
Os.34151.1.S1_a_at--440--7271Chr02:28262651..28262675 (25 bp)
GTCCAAACTGCTGGCTTTCCGATTT
LOC_Os02g46380
Os.34151.1.S1_a_at--834--10291Chr02:28262666..28262690 (25 bp)
TTTCCGATTTTGTTCATTGCCCTAT
LOC_Os02g46380
Os.34151.1.S1_a_at--137--10711Chr02:28262682..28262706 (25 bp)
TTGCCCTATTTCTTTTCCATTCAAA
LOC_Os02g46380
Os.34151.1.S1_a_at--894--9451Chr02:28262770..28262794 (25 bp)
TCTGATATATGTTGTCCTGGGCCTC
LOC_Os02g46380
Os.34151.1.S1_a_at--1087--8651Chr02:28262787..28262811 (25 bp)
TGGGCCTCATCATTGCTGCAGACGA
LOC_Os02g46380
Os.34151.1.S1_a_at--448--10091Chr02:28262825..28262849 (25 bp)
TATGGCCTACTATATCTTCCGGTCT
LOC_Os02g46380
Target Sequence 
AAGCTGCAACTTCGTCAACTCATGAAGTACCTATACAGAACTCTCCTGTCAAGAGTTGGCAATGGTGGCTGATGGTGGGA
GTTAACATGTTCTTCCTCATTGCCGGTCAGACCGCATCTACACTTCTTGGGAGGTTCTACTACAATCAAGGCGGCAATAG
CAAGTGGATGTCCACATTCGTCCAAACTGCTGGCTTTCCGATTTTGTTCATTGCCCTATTTCTTTTCCATTCAAAGACAT
CTTCTACACAAACAGTCACTAGTAGTCCTGCCCCTACAATTTCTATCCCCAAAATTACTCTGATATATGTTGTCCTGGGC
CTCATCATTGCTGCAGACGACTTGATGTATTCCTATGGCCTACTATATCTTCCGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34151.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis