Browse Element(s) Details


Os.11599.1.S1_at

Description gb:AK072685.1
DB_XREF= gi:32982708
TID=Os.11599.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J01, full insert sequence.
FL= gb:AK072685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4642011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11599.1.S1_at--160--9291Chr02:28272916..28272940 (25 bp)
TCCGGTGATCTTTTCACGTTTTCTT
LOC_Os02g46420
Os.11599.1.S1_at--269--10372Chr11:3215735..3216050 (25 bp)
TTTTTCACCTTTTTCATCTTCTCTT
NONE
Os.11599.1.S1_at--96--9711Chr02:28272851..28272875 (25 bp)
TAATCCCAATTACCATCCTTTTTAG
LOC_Os02g46420
Os.11599.1.S1_at--698--9911Chr02:28272808..28272832 (25 bp)
TACTCGCATTTTGTCCATCCATGAA
LOC_Os02g46420
Os.11599.1.S1_at--383--9791Chr02:28272774..28272798 (25 bp)
TAAGATTTTATACTCCCAACTCCAA
LOC_Os02g46420
Os.11599.1.S1_at--428--9211Chr02:28272754..28272778 (25 bp)
TCCAAACCACTTCGTTGACATATAG
LOC_Os02g46420
Os.11599.1.S1_at--1094--231Chr02:28272735..28272759 (25 bp)
ATATAGGTTACTACTGCTCGTCAGC
LOC_Os02g46420
Os.11599.1.S1_at--151--9411Chr02:28272718..28272742 (25 bp)
TCGTCAGCCGACCATTACTGTAAGA
LOC_Os02g46420
Os.11599.1.S1_at--578--7031Chr02:28272678..28272702 (25 bp)
GTACAGCTAGTTGTCTAATCTTGAT
LOC_Os02g46420
Os.11599.1.S1_at--782--831Chr02:28272571..28272595 (25 bp)
ATGGACTGCACGGTACAGGTCGTTT
LOC_Os02g46420
Os.11599.1.S1_at--1000--2111Chr02:28272557..28272581 (25 bp)
ACAGGTCGTTTGTACACAGGATTAA
LOC_Os02g46420
Target Sequence 
TCCGGTGATCTTTTCACGTTTTCTTTTTCACCTTTTTCATCTTCTCTTCACCGCTTATCNCCACCTAATCCCAATTACCA
TCCTTTTTAGATTTTTNTTCTCCTTTCTTACTCGCATTTTGTCCATCCATGAAAAGTCTCTATAAGATTTTATACTCCCA
ACTCCAAACCACTTCGTTGACATATAGGTTACTACTGCTCGTCAGCCGACCATTACTGTAAGAGCTGCTTGTTTGTTTGT
ACAGCTAGTTGTCTAATCTTGATTTGCAAAATTGTTAATTAACCTTAGTTTCTTTTTTTTTTCTTTGATGCTTGGGTTTA
AGAATGAGTGGACTTGTTGATGTGCATGGACTGCACGGTACAGGTCGTTTGTACACAGGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis