Browse Element(s) Details


Os.16052.1.S1_at

Description gb:BI801297
DB_XREF= gi:16574001
DB_XREF=H045D12
CLONE=H045D12
TID=Os.16052.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16052 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g464503/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46460Os.9303.1.S1_at9/112+28306721..28310326POT family protein, expressed
LOC_Os02g46460OsAffx.24785.1.S1_x_at1/112+28306721..28310326POT family protein, expressed
LOC_Os02g46469NANA2+28313113..28313685NA

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16052.1.S1_at--168--2291NONE
AAATCCAGCCTGTTGTGTGGCTACC
NONE
Os.16052.1.S1_at--409--8311NONE
GGCTACCATGTTGGCCTGTTTTGCA
NONE
Os.16052.1.S1_at--187--10871NONE
TTGGCCTGTTTTGCACTGAATGTGT
NONE
Os.16052.1.S1_at--979--7471NONE
GTGTGTGTTTCAGATGTTTACCCTT
NONE
Os.16052.1.S1_at--501--3431NONE
CAGATGTTTACCCTTTCGTGGTGGT
NONE
Os.16052.1.S1_at--252--7731NONE
GGTGGTTTGTCACCCACTTGGTCAT
NONE
Os.16052.1.S1_at--184--111NONE
ATTCGTGGTTAAATCACACTCGTGA
NONE
Os.16052.1.S1_at--397--7451NONE
GTGTAATCACTGAAGTCTTGACTCC
NONE
Os.16052.1.S1_at--603--3831Chr02:28288203..28288227 (25 bp)
CTGAAGTCTTGACTCCATGGTATCC
LOC_Os02g46450
Os.16052.1.S1_at--763--2771Chr02:28288169..28288193 (25 bp)
AAGACCACATATAGGTACATCTGTA
LOC_Os02g46450
Os.16052.1.S1_at--103--7851Chr02:28288156..28288180 (25 bp)
GGTACATCTGTACATGCATGCTACG
LOC_Os02g46450
Target Sequence 
AAATCCAGCCTGTTGTGTGGCTACCATGTTGGCCTGTTTTGCACTGAATGTGTGTGTTTCAGATGTTTACCCTTTCGTGG
TGGTTTGTCACCCACTTGGTCATCAAAATCAAGAGTTTAGAAATGACATTCGTGGTTAAATCACACTCGTGAAATTCGAT
ATTCTAATTTCACTGGAGGAAAAATTATTTTGTTTGTGTAATCACTGAAGTCTTGACTCCATGGTATCCAAGAGAGGTAA
GACCACATATAGGTACATCTGTACATGCATGCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis