Browse Element(s) Details


Os.9303.1.S1_at

Description gb:AK065840.1
DB_XREF= gi:32975858
TID=Os.9303.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036C22, full insert sequence.
FL= gb:AK065840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g464609/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46460Os.9303.1.S1_at9/112+28306721..28310326POT family protein, expressed
LOC_Os02g46460OsAffx.24785.1.S1_x_at1/112+28306721..28310326POT family protein, expressed
LOC_Os02g46469NANA2+28313113..28313685NA
LOC_Os02g46480Os.53112.1.S1_at5/112+28328986..28329240expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9303.1.S1_at--988--2671Chr02:28307094..28307118 (25 bp)
AAGCGTCAGGATGAATCGGCCGTCT
LOC_Os02g46460
Os.9303.1.S1_at--1056--4791Chr02:28307069..28307093 (25 bp)
GCTCGCGCTCGATAGATGCATGGCA
LOC_Os02g46460
Os.9303.1.S1_at--388--5751Chr02:28307026..28307050 (25 bp)
GACGGAGACTGCAGACTCTTCGAGG
LOC_Os02g46460
Os.9303.1.S1_at--576--5091Chr02:28306971..28306995 (25 bp)
GCACGACAAGTCTCCGTTGATGATA
LOC_Os02g46460
Os.9303.1.S1_at--231--2791Chr02:28306907..28306931 (25 bp)
AAGAGGTCGCCTACAGATGCAGTAT
LOC_Os02g46460
Os.9303.1.S1_at--740--10231Chr02:28306885..28306909 (25 bp)
TATTGTTCTATCATGTACGCCTGTG
LOC_Os02g46460
Os.9303.1.S1_at--961--8751Chr02:28306872..28306896 (25 bp)
TGTACGCCTGTGTTTCATCGTTTCA
LOC_Os02g46460
Os.9303.1.S1_at--78--3551Chr02:28306857..28306881 (25 bp)
CATCGTTTCACATTTTTCTGGCCAA
LOC_Os02g46460
Os.9303.1.S1_at--1093--5951Chr02:28306824..28306848 (25 bp)
GAGAACGCGACTGTTACTGACCACT
LOC_Os02g46460
Os.9303.1.S1_at--723--3871NONE
CTGTGCATTGCCGACTGGTGATTGA
NONE
Os.9303.1.S1_at--92--3091Chr02:28306720..28306744 (25 bp)
AATAATACTTCATTTTCCCTGCCTA
NONE
Target Sequence 
AAGCGTCAGGATGAATCGGCCGTCTGCTCGCGCTCGATAGATGCATGGCAGGCTGTCGTGGTTCTTGAGACGGAGACTGC
AGACTCTTCGAGGGGATGAGTTGCATTGGGACGAGTTGGTTTAGCACGACAAGTCTCCGTTGATGATAGGACATGCACGG
GGGGATAGTGACACGATACTAAAGAATAAGAGGTCGCCTACAGATGCAGTATTGTTCTATCATGTACGCCTGTGTTTCAT
CGTTTCACATTTTTCTGGCCAATGTAACAAGAGAACGCGACTGTTACTGACCACTCATGTTTTTTCTTCTGCAAGNGTGA
CTGATCAATGCTTCTGTGCATTGCCGACTGGTGATTGATACGCATACTAGTGCTAATAATACTTCATTTTCCCTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis