Browse Element(s) Details


Os.53112.1.S1_at

Description gb:AK070868.1
DB_XREF= gi:32980891
TID=Os.53112.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070L01, full insert sequence.
FL= gb:AK070868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g464805/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46460Os.9303.1.S1_at9/112+28306721..28310326POT family protein, expressed
LOC_Os02g46460OsAffx.24785.1.S1_x_at1/112+28306721..28310326POT family protein, expressed
LOC_Os02g46469NANA2+28313113..28313685NA
LOC_Os02g46480Os.53112.1.S1_at5/112+28328986..28329240expressed protein
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53112.1.S1_at--471--5431Chr02:28327192..28327211 (20 bp)
GAACCTCGACTGATCTACTGCCTTT
NONE
Os.53112.1.S1_at--574--451NONE
ATCTACTGCCTTTGACCGATGGCAT
NONE
Os.53112.1.S1_at--685--1631Chr02:28329000..28329024 (25 bp)
AGCGCCAACAGCAACGGAGTTCACT
LOC_Os02g46480
Os.53112.1.S1_at--720--2691Chr02:28329029..28329053 (25 bp)
AAGCTGCTCGTCAGTCTCTCATTGA
LOC_Os02g46480
Os.53112.1.S1_at--199--8051Chr02:28329072..28329096 (25 bp)
GGAGAAACCTTCAGCCCAGAACCTG
LOC_Os02g46480
Os.53112.1.S1_at--993--5871Chr02:28329111..28329135 (25 bp)
GAGCCCACGTGCAGCAAACGAAGAT
LOC_Os02g46480
Os.53112.1.S1_at--818--2351Chr02:28329165..28329189 (25 bp)
AAAGCTGATCTCAATCTCCTACCTT
LOC_Os02g46480
Os.53112.1.S1_at--144--631Chr02:28329249..28329273 (25 bp)
ATGCTCCTACTCGTGCGTGTGTGGC
NONE
Os.53112.1.S1_at--601--5491Chr02:28329427..28329451 (25 bp)
GAACAGGCTTGCTTAATCCTTGCAT
NONE
Os.53112.1.S1_at--684--8811Chr02:28329462..28329486 (25 bp)
TGTTGCATAAGCTTAGTTGTTTCCT
NONE
Os.53112.1.S1_at--634--10611Chr02:28329502..28329526 (25 bp)
TTCGAAGTGCTACATTTTGCCCTCT
NONE
Target Sequence 
GAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGC
TCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCC
CACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCG
GATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCAC
AGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATACTTTTNGGGTGCTTATGTTTCTAACCCTA
AGAAACATTCAGGGGGAAAAAAAAGAACAGATAGTTGTACAGATGACTTTGTGACGAAGAACTATTTACCAGGAACAGGC
TTGCTTAATCCTTGCATGTTATTTTGTTGTTGCATAAGCTTAGTTGTTTCCTTATAATGTATGGTTATTCGAAGTGCTAC
ATTTTGCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis