Browse Element(s) Details


Os.57056.1.S1_at

Description gb:AK110831.1
DB_XREF= gi:32996040
TID=Os.57056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A04, full insert sequence.
FL= gb:AK110831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4650011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46480Os.53112.1.S1_at5/112+28328986..28329240expressed protein
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57056.1.S1_at--168--7111Chr02:28347130..28347154 (25 bp)
GTCACCGAGCGGGTACTGCTGCTGC
LOC_Os02g46500
Os.57056.1.S1_at--229--9731Chr02:28347272..28347296 (25 bp)
TCAAGGTGCTGTGGCTCGTGTCCGT
LOC_Os02g46500
Os.57056.1.S1_at--353--5311Chr02:28347312..28347336 (25 bp)
GAAGGTCCTCGAGGACATGATGCTG
LOC_Os02g46500
Os.57056.1.S1_at--432--2111Chr02:28347326..28347350 (25 bp)
ACATGATGCTGACCGGCGCCGTCGC
LOC_Os02g46500
Os.57056.1.S1_at--141--10071Chr02:28347431..28347455 (25 bp)
TAGTCTGGAGGCAGTACGCGTGCTT
LOC_Os02g46500
Os.57056.1.S1_at--626--4191Chr02:28347461..28347485 (25 bp)
CCGACTTCAGGGACTACCTCAGGCT
LOC_Os02g46500
Os.57056.1.S1_at--625--1751Chr02:28347476..28347500 (25 bp)
ACCTCAGGCTGCTCGATTGATTCTT
LOC_Os02g46500
Os.57056.1.S1_at--381--3771Chr02:28347507..28347531 (25 bp)
CTCTCTTTCTGATTACCGTGGCTAA
LOC_Os02g46500
Os.57056.1.S1_at--975--9951Chr02:28347520..28347544 (25 bp)
TACCGTGGCTAAGCTGTAACAACAA
LOC_Os02g46500
Os.57056.1.S1_at--765--2971Chr02:28347620..28347644 (25 bp)
AATGTGTTTTCTCATCACGTACAAA
LOC_Os02g46500
Os.57056.1.S1_at--842--2291Chr02:28347648..28347672 (25 bp)
AAAGGGAACGTAATGCATTTCAAGT
LOC_Os02g46500
Target Sequence 
GTCACCGAGCGGGTACTGCTGCTGCTGAAGCGGCTGTGCAAGTGCCCCGAGGGGCGGCTCGCCTTCGCGGAGCACGACCT
GTCGGTGGCGGCCGTGGCGAGGACGATGCTGCGCGTGTCGGAGCTGTCCACGCAGCTCGCCGTCAAGGTGCTGTGGCTCG
TGTCCGTGGTGGCGCCGTCGGAGAAGGTCCTCGAGGACATGATGCTGACCGGCGCCGTCGCGAAGCTCCTGGGGCTGCTC
CACGTCGAGAGCTCGCCGTCGACGAAGCAGAAGACGGTGAGGATGGTTAGGATCCACGGGGTAGTCTGGAGGCAGTACGC
GTGCTTCCCTACCGACTTCAGGGACTACCTCAGGCTGCTCGATTGATTCTTTCTCCCCTCTCTTTCTGATTACCGTGGCT
AAGCTGTAACAACAAAGCAGATGGAAATTGTGTTTTTTTTTCTGGTCCCTCGAAAAAAAGAATGTGTATTTTTTACAGAA
AAAAATCGGAAATGTGTTTTCTCATCACGTACAAAAAAAAGGGAACGTAATGCATTTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis