Browse Element(s) Details


Os.10393.1.S1_at

Description gb:AK105916.1
DB_XREF= gi:32991125
TID=Os.10393.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H10, full insert sequence.
FL= gb:AK101568.1 gb:AK105916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4652011/11Peptidase family M20/M25/M40 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein
LOC_Os02g46550OsAffx.2980.1.S1_at11/112+28382185..28382508hypothetical protein
LOC_Os02g46560Os.51109.1.S1_at11/112+28384301..28387379Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10393.1.S1_at--155--7731Chr02:28360199..28360223 (25 bp)
GGTGGCCTGTAATCTCGAGTCGCGA
LOC_Os02g46520
Os.10393.1.S1_at--621--451Chr02:28360210..28360234 (25 bp)
ATCTCGAGTCGCGAGGCTTTCAAGC
LOC_Os02g46520
Os.10393.1.S1_at--583--8291Chr02:28360681..28360705 (25 bp)
GGCTTACTCAAGACATACCACGCAA
LOC_Os02g46520
Os.10393.1.S1_at--1090--2711Chr02:28360778..28360802 (25 bp)
AAGCAGATGTTTGAGTCTTGTTTTA
LOC_Os02g46520
Os.10393.1.S1_at--790--2012Chr05:17821845..17821864 (20 bp)
ACTCACAGTGCAAGCTACCCAAAAT
NONE
Os.10393.1.S1_at--1074--691Chr02:28360888..28360912 (25 bp)
ATGAGGAACCTCAGGCTAAGGCCAC
LOC_Os02g46520
Os.10393.1.S1_at--670--4291Chr02:28360917..28360941 (25 bp)
CCTCTCCCACGGTGCAAAGATGCTT
LOC_Os02g46520
Os.10393.1.S1_at--638--1212Chr02:28360954..28360978 (25 bp)
AGTTTTTCATGTAAACCCTTGTCAT
LOC_Os02g46520
Os.10393.1.S1_at--1013--2371Chr02:28360966..28360990 (25 bp)
AAACCCTTGTCATCTTCTATTCTAG
LOC_Os02g46520
Os.10393.1.S1_at--955--432Chr05:20009631..20009655 (25 bp)
ATCTTCTATTCTAGTCCTCACATGT
NONE
Os.10393.1.S1_at--792--9532Chr05:20009640..20009663 (24 bp)
TCTAGTCCTCACATGTTTTCAAACA
NONE
Target Sequence 
GGTGGCCTGTAATCTCGAGTCGCGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGAACCAT
ATTCCATTACTGGGAGTCTGCCCCTGATTAGGGAATTACAGGATGAAGGGTTTGATGTTCAGACTGCTGGGTATGGCTTA
CTCAAGACATACCACGCAAAGAACGAGTACTGTCTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTCTGAGCATCAT
TTCACAGTTGGAAGCAGATGTTTGAGTCTTGTTTTAGGGAGGAAAAAAATGAGCGTTCACTGGTACTTATTCCTGTTACT
TGTTGCTCTAATAAAGGCACTCACAGTGCAAGCTACCCAAAATGAGGAACCTCAGGCTAAGGCCACACCTCCTCTCCCAC
GGTGCAAAGATGCTTTAGGGTGTTNTTAGTTTTTCATGTAAACCCTTGTCATCTTCTATTCTAGTCCTCACATGTTTTCA
AACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis