Browse Element(s) Details


OsAffx.24755.1.S1_at

Description tigr:9630.m04523
TID=OsAffx.24755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4653011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein
LOC_Os02g46550OsAffx.2980.1.S1_at11/112+28382185..28382508hypothetical protein
LOC_Os02g46560Os.51109.1.S1_at11/112+28384301..28387379Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24755.1.S1_at--33--8491Chr02:28362826..28362850 (25 bp)
TGGCGGCGCGGCACTCAAGATCCAA
LOC_Os02g46530
OsAffx.24755.1.S1_at--93--6191Chr02:28362876..28362900 (25 bp)
GAGGAGCTGTTGGCCACCCTGCGCA
LOC_Os02g46530
OsAffx.24755.1.S1_at--976--9031Chr02:28363044..28363068 (25 bp)
TGCACCGTTCGCCATCTATGGAGGA
LOC_Os02g46530
OsAffx.24755.1.S1_at--444--6711Chr02:28363050..28363074 (25 bp)
GTTCGCCATCTATGGAGGAGACGAG
LOC_Os02g46530
OsAffx.24755.1.S1_at--703--9431Chr02:28363106..28363130 (25 bp)
TCGGTGGGCTGATGAGCCCTTTAGC
LOC_Os02g46530
OsAffx.24755.1.S1_at--196--8871Chr02:28363115..28363139 (25 bp)
TGATGAGCCCTTTAGCTGGGCTATA
LOC_Os02g46530
OsAffx.24755.1.S1_at--1093--4711Chr02:28363129..28363153 (25 bp)
GCTGGGCTATAGAAGGGTACTTTCA
LOC_Os02g46530
OsAffx.24755.1.S1_at--50--7851Chr02:28363144..28363168 (25 bp)
GGTACTTTCATAATTTTTCACTTTG
LOC_Os02g46530
OsAffx.24755.1.S1_at--1079--10371Chr02:28363158..28363182 (25 bp)
TTTTCACTTTGTGGGCTGGAGTATC
LOC_Os02g46530
OsAffx.24755.1.S1_at--50--3331Chr02:28363162..28363186 (25 bp)
CACTTTGTGGGCTGGAGTATCTTTA
LOC_Os02g46530
OsAffx.24755.1.S1_at--1015--6891Chr02:28363178..28363202 (25 bp)
GTATCTTTATCAAGTGGTCTCAGAT
LOC_Os02g46530
Target Sequence 
TGGCGGCGCGGCACTCAAGATCCAACCTCCGCGTGCCGCTCGCCGTGGTGGAGGAGCTGTTGGCCACCCTGCGCACCATC
GGCGGCCCCACGAAGATCCGCGACAGCGACGACCTCACGGCAGCCGACGACGGGAGAGAGAGGCCGATGGGAGAGAGAGG
CCACCCCGCGCTCCCCTCGCGGTCGTCCACCCCGCGCGCTGCTCGCCTTTCGCCACCGTGCACCGTTCGCCATCTATGGA
GGAGACGAGAAGAGGAGAGGAAGAGACAAGGACGGCAGCGTCGGTGGGCTGATGAGCCCTTTAGCTGGGCTATAGAAGGG
TACTTTCATAATTTTTCACTTTGTGGGCTGGAGTATCTTTATCAAGTGGTCTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis