Browse Element(s) Details


Os.54049.1.S1_at

Description gb:AK101521.1
DB_XREF= gi:32986730
TID=Os.54049.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046L04, full insert sequence.
FL= gb:AK101521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4649011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46480Os.53112.1.S1_at5/112+28328986..28329240expressed protein
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54049.1.S1_at--244--5331Chr02:28343719..28343743 (25 bp)
GAAGTCGTCCGGAACATATGTGTGA
LOC_Os02g46490
Os.54049.1.S1_at--382--2871Chr02:28343790..28343814 (25 bp)
AAGTGATCTCAGCTGGTCAGAGCCT
LOC_Os02g46490
Os.54049.1.S1_at--1074--1371Chr02:28343808..28343832 (25 bp)
AGAGCCTCTGAGCAACTGCATTTAT
LOC_Os02g46490
Os.54049.1.S1_at--269--6331Chr02:28343872..28343896 (25 bp)
GATGCACTCCATACATTTGTCAAAG
LOC_Os02g46490
Os.54049.1.S1_at--796--8091Chr02:28343908..28343932 (25 bp)
GGAGCCAGCGTTGGTCTAGATCTTA
LOC_Os02g46490
Os.54049.1.S1_at--588--1431Chr02:28344044..28344068 (25 bp)
AGAACACTTTCTTTTGTGACCCGCT
LOC_Os02g46490
Os.54049.1.S1_at--1058--7371Chr02:28344059..28344083 (25 bp)
GTGACCCGCTTAGTTGATTGGTTAC
LOC_Os02g46490
Os.54049.1.S1_at--501--6611Chr02:28344074..28344098 (25 bp)
GATTGGTTACATACTCACCTGTGAC
LOC_Os02g46490
Os.54049.1.S1_at--941--6591Chr02:28344147..28344171 (25 bp)
GATTGACACTTCTTTCATTTTTGGA
LOC_Os02g46490
Os.54049.1.S1_at--1029--2931Chr02:28344188..28344212 (25 bp)
AAGGCGCCGTTTTCATGTTCATGTC
LOC_Os02g46490
Os.54049.1.S1_at--773--791Chr02:28344278..28344302 (25 bp)
ATGTGGTGCTCAACATCGTTTTCGT
LOC_Os02g46490
Target Sequence 
GAAGTCGTCCGGAACATATGTGTGATGATCNGTTGGAACAATGTCGATGTCAATATTTATGGTGACGCATCAAGTGATCT
CAGCTGGTCAGAGCCTCTGAGCAACTGCATTTATGCTCATCAGGGGAGAAACACCCACAGATGGNTGACAGATGATGCAC
TCCATACATTTGTCAAAGCGATTGGAGTTGGAGCCAGCGTTGGTCTAGATCTTAGCTTCAGCACAAAACACAGTCCATGA
ATGTGCTAGAGAGTTANTTCTCGGTTGGACCAAGATTGCAGAGAGAGATGACACATANGAGGAATCCCTTTGCAAAGCAG
AGTTAAGAACACTTTCTTTTGTGACCCGCTTAGTTGATTGGTTACATACTCACCTGTGACAATTCCCTCACCCCCCTCCC
CCCTAGCTGGCTAGCTATGCTGCATAGAGATTGACACTTCTTTCATTTTTGGAGAAAGAACGTCTTTGGAAGGCGCCGTT
TTCATGTTCATGTCAGGAATGGGAAGGAAATGTAATATGATTGGATATTCATGGTGAAGAAATTGAAAATGTGTCCCTCA
TGTGGTGCTCAACATCGTTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis