Browse Element(s) Details


Os.22806.1.S1_s_at

Description gb:AU030655
DB_XREF= gi:3766545
DB_XREF=AU030655
CLONE=E60059_2Z
TID=Os.22806.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22806 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4651011/11Clathrin coat assembly protein AP50, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46480Os.53112.1.S1_at5/112+28328986..28329240expressed protein
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22806.1.S1_s_at--136--3711Chr02:28354347..28354371 (25 bp)
CTAGTACGGCGTCATGAATGATCAT
LOC_Os02g46510
Os.22806.1.S1_s_at--1084--9871Chr02:28354385..28354409 (25 bp)
TACATATGACACCACTTTTTCTTTA
LOC_Os02g46510
Os.22806.1.S1_s_at--235--10571Chr02:28354403..28354427 (25 bp)
TTCTTTAAGCTATTACTTTGGCAAA
LOC_Os02g46510
Os.22806.1.S1_s_at--333--3691Chr02:28354418..28354442 (25 bp)
CTTTGGCAAAGGGTAGAGCAGAGCA
LOC_Os02g46510
Os.22806.1.S1_s_at--1157--3411Chr02:28354441..28354465 (25 bp)
CAGACAAATTTTCCTGGGTTCTTGT
LOC_Os02g46510
Os.22806.1.S1_s_at--607--8631Chr02:28354455..28354479 (25 bp)
TGGGTTCTTGTAATCGTTTTGACAC
LOC_Os02g46510
Os.22806.1.S1_s_at--108--6811Chr02:28354470..28354494 (25 bp)
GTTTTGACACGGGATATCTAGTATC
LOC_Os02g46510
Os.22806.1.S1_s_at--625--6511Chr02:28354482..28354506 (25 bp)
GATATCTAGTATCCCCTGAGTCTTG
LOC_Os02g46510
Os.22806.1.S1_s_at--993--10051Chr02:28354488..28354512 (25 bp)
TAGTATCCCCTGAGTCTTGTTTGTG
LOC_Os02g46510
Os.22806.1.S1_s_at--343--7491Chr02:28354512..28354536 (25 bp)
GTGGTAGGGCATATTTTCATTTGTA
LOC_Os02g46510
Os.22806.1.S1_s_at--411--3751Chr02:28354586..28354610 (25 bp)
CTCATTGGCAGTTTGTATTGCTTTC
LOC_Os02g46510
Target Sequence 
CTAGTACGGCGTCATGAATGATCATAAAGCATGTATATTACATATGACACCACTTTTTCTTTAAGCTATTACTTTGGCAA
AGGGTAGAGCAGAGCAGACAAATTTTCCTGGGTTCTTGTAATCGTTTTGACACGGGATATCTAGTATCCCCTGAGTCTTG
TTTGTGTGGTAGGGCATATTTTCATTTGTATATGAGAAGATGGCGGTAGCGTTTGTTCTTGTTGATCAATATACATATAC
TCATTGGCAGTTTGTATTGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22806.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis