Browse Element(s) Details


OsAffx.2979.1.S1_at

Description tigr:9630.m04510
TID=OsAffx.2979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4641011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2979.1.S1_at--559--10211Chr02:28267599..28267623 (25 bp)
TTTCCGGCCCGTCCAAGAAATATTG
LOC_Os02g46410
OsAffx.2979.1.S1_at--1035--5571Chr02:28267615..28267639 (25 bp)
GAAATATTGCAGTCTTTCCGTTAAG
LOC_Os02g46410
OsAffx.2979.1.S1_at--813--9751Chr02:28267716..28267740 (25 bp)
TAAGGATTCTGTCTCACCGAACTGT
LOC_Os02g46410
OsAffx.2979.1.S1_at--1104--5451Chr02:28267734..28267758 (25 bp)
GAACTGTCCGTCCATTTTGCAGTAC
LOC_Os02g46410
OsAffx.2979.1.S1_at--357--8031Chr02:28267782..28267806 (25 bp)
GGAGAAACCAACTGGACCGCTGCCA
LOC_Os02g46410
OsAffx.2979.1.S1_at--80--3091Chr02:28267832..28267856 (25 bp)
AATACTCTCAACAGCCAGTTTCGTA
LOC_Os02g46410
OsAffx.2979.1.S1_at--354--6951Chr02:28267854..28267878 (25 bp)
GTAGATCGTGCTTGGGTCATCGCCA
LOC_Os02g46410
OsAffx.2979.1.S1_at--159--5371Chr02:28268068..28268090 (23 bp)
GAAGACGCATTTATCCTCGAGGTTG
LOC_Os02g46410
OsAffx.2979.1.S1_at--610--1251Chr02:28268156..28268180 (25 bp)
AGATTCTTCTACTCCACGGAAGCTT
LOC_Os02g46410
OsAffx.2979.1.S1_at--449--8191Chr02:28268173..28268197 (25 bp)
GGAAGCTTCAATCGGCCTCACACAG
LOC_Os02g46410
OsAffx.2979.1.S1_at--302--8431Chr02:28268186..28268210 (25 bp)
GGCCTCACACAGTGCTGGATCAGTA
LOC_Os02g46410
Target Sequence 
TTTCCGGCCCGTCCAAGAAATATTGCAGTCTTTCCGTTAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAATGTTGCAGTACTGCAGAAATCACCAAGCACAGCGTAAGGATTCTGTCTCACCGAACTGTCCGTCCATTTTGCAGTAC
AAGACTACATAGTTTGCAGAAACGGAGAAACCAACTGGACCGCTGCCACCGAAAATGGAGAATCTATGACATAAATACTC
TCAACAGCCAGTTTCGTAGATCGTGCTTGGGTCATCGCCATGCGCTGGCGCGTCAGCAAGAAGACGCATTTATCCTCGAG
GTTGGTGGAATGGCGACCATCACCGTACCTGTCCCTGGAGATGAAGTACTCCGTACATCAAACGCCAGAAGATTCTTCTA
CTCCACGGAAGCTTCAATCGGCCTCACACAGTGCTGGATCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis