Browse Element(s) Details


Os.3206.1.S1_at

Description gb:AK072259.1
DB_XREF= gi:32982282
TID=Os.3206.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cellulose synthase (OSJNBa0006L06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009D02, full insert sequence.
FL= gb:AK072259.1 gb:AK120265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3298011/11Cellulose synthase A catalytic subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g33020OsAffx.30648.1.S1_at11/1110+16961305..16962003hypothetical protein
LOC_Os10g33020OsAffx.14013.2.S1_at2/1110+16961305..16962003hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3206.1.S1_at--325--7231Chr10:16936717..16936741 (25 bp)
TGTCGGACGCCGTGAACAACGGGTA
LOC_Os10g32980
Os.3206.1.S1_at--852--4351Chr10:16936846..16936870 (25 bp)
CCACCATTGTCGTGCTCTGGTCCAT
LOC_Os10g32980
Os.3206.1.S1_at--1051--31Chr10:16936851..16936875 (25 bp)
ATTGTCGTGCTCTGGTCCATCCTCC
LOC_Os10g32980
Os.3206.1.S1_at--278--7151Chr10:16936896..16936920 (25 bp)
GTCTGGGTCAGGATCGACCCCTTCA
LOC_Os10g32980
Os.3206.1.S1_at--337--9091Chr10:16936979..16937003 (25 bp)
TGCTACTTCTCTGTGTCTCTGCATT
LOC_Os10g32980
Os.3206.1.S1_at--1135--10571Chr10:16936985..16937009 (25 bp)
TTCTCTGTGTCTCTGCATTTTGCAA
LOC_Os10g32980
Os.3206.1.S1_at--637--4931Chr10:16936999..16937023 (25 bp)
GCATTTTGCAAGAGGGATGACCGGA
LOC_Os10g32980
Os.3206.1.S1_at--467--691Chr10:16937015..16937039 (25 bp)
ATGACCGGATGGATGATTCTTGTTG
LOC_Os10g32980
Os.3206.1.S1_at--27--8571Chr10:16937024..16937048 (25 bp)
TGGATGATTCTTGTTGTATGGAGTA
LOC_Os10g32980
Os.3206.1.S1_at--754--8551Chr10:16937042..16937066 (25 bp)
TGGAGTATTTTGACTTGTTCATGTA
LOC_Os10g32980
Os.3206.1.S1_at--212--7511Chr10:16937123..16937147 (25 bp)
GTGGAGATTATACTCGAATTTAAGA
LOC_Os10g32980
Target Sequence 
TGTCGGACGCCGTGAACAACGGGTACGGNTCGTGGGGCCCGCTGTTCGGGAAGCTCTTCTTCTCCTTCTGGGTCATCCTC
CACCTCTACCCCTTCCTCAAGGGGCTCATGGGGAGGCAGAACCGGACGCCCACCATTGTCGTGCTCTGGTCCATCCTCCT
CGCCTCCATCTTCTCCCTCGTCTGGGTCAGGATCGACCCCTTCATCCCCAAGCCCAAGGGCCCCGTCCTCAAGCCATGCG
GGGTCTCGTGCTGANGCTGCTGCTGCTACTTCTCTGTGTCTCTGCATTTTGCAAGAGGGATGACCGGATGGATGATTCTT
GTTGTATGGAGTATTTTGACTTGTTCATGTACAAGTTTTTGTGAGTGGGATAAAAGTGTTTTGGGGGTAAAATTTGTAAG
AACTGAGGTGGAGATTATACTCGAATTTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis