Browse Element(s) Details


Os.10119.1.S1_a_at

Description gb:AK121556.1
DB_XREF= gi:37991179
TID=Os.10119.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033I04, full insert sequence.
FL= gb:AK121556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0860011/11pre-mRNA splicing factor PRP38 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08570Os.4822.1.S1_at11/115+4659483..4662516AUX/IAA family protein, expressed
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10119.1.S1_a_at--954--7811Chr05:4686122..4686146 (25 bp)
GGTAGCAGGCACAGACGGTCCAGCT
LOC_Os05g08600
Os.10119.1.S1_a_at--126--9231Chr05:4686140..4686164 (25 bp)
TCCAGCTCTCGGCACAGAAGCAGAA
LOC_Os05g08600
Os.10119.1.S1_a_at--1016--8031Chr05:4686217..4686241 (25 bp)
GGAGAGATCCAGTCCTTTTGGCAAT
LOC_Os05g08600
Os.10119.1.S1_a_at--866--2331Chr05:4686253..4686277 (25 bp)
AAAGACTGCTGCCATCTCGAGCAAC
LOC_Os05g08600
Os.10119.1.S1_a_at--334--5231Chr05:4686397..4686421 (25 bp)
GAATTTGTGACTGTAACCCTGTTGT
LOC_Os05g08600
Os.10119.1.S1_a_at--643--8151Chr05:4686408..4686432 (25 bp)
TGTAACCCTGTTGTTCCTCAAAGAA
LOC_Os05g08600
Os.10119.1.S1_a_at--229--6631Chr05:4686441..4686465 (25 bp)
GTTGTCAGTACACCTTTTCTTTCAT
LOC_Os05g08600
Os.10119.1.S1_a_at--845--9551Chr05:4686458..4686482 (25 bp)
TCTTTCATCTGCCAGTTTCTCAAGA
LOC_Os05g08600
Os.10119.1.S1_a_at--995--5531Chr05:4686481..4686505 (25 bp)
GAAACTTGTTAATACTTGGCATCTC
LOC_Os05g08600
Os.10119.1.S1_a_at--588--10851Chr05:4686496..4686520 (25 bp)
TTGGCATCTCAAAACACCTTACTAT
LOC_Os05g08600
Os.10119.1.S1_a_at--596--6471Chr05:4686566..4686590 (25 bp)
GATACATGTTGGTTCCCTATGTTTT
LOC_Os05g08600
Target Sequence 
GGTAGCAGGCACAGACGGTCCAGCTCTCGGCACAGAAGCAGAAGCCGCAGCCGCAGCCGCAGCCGCAGCAGAAGCAGGAG
CCGCAGCAGAAATGAGGAGAGATCCAGTCCTTTTGGCAATGCAGGCAAAGAAAAGACTGCTGCCATCTCGAGCAACCTAG
CAAAGCTCAAGGACTTGTATGGTGATGTAACTGAGAAGAAGGACGACGGTGAAGCCCCTCGCCGTGATTCGTGCGCGGAG
GAGGTTATCAGGTTGGGTGGCCCGAGATGGAGATAGAATTTGTGACTGTAACCCTGTTGTTCCTCAAAGAACCTGATATG
TTGTCAGTACACCTTTTCTTTCATCTGCCAGTTTCTCAAGAAACTTGTTAATACTTGGCATCTCAAAACACCTTACTATA
ATATGTCAACAATGGTAGTTTGTATGGTATGGATGGATGACATTGATACATGTTGGTTCCCTATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10119.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis