Browse Element(s) Details


Os.49162.1.S1_at

Description gb:AK071804.1
DB_XREF= gi:32981827
TID=Os.49162.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110J02, full insert sequence.
FL= gb:AK071804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0861011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein
LOC_Os05g08640Os.17173.1.S1_at10/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08640OsAffx.9719.1.S1_x_at2/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08650OsAffx.25367.1.S1_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08650Os.19099.1.S1_x_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.46314.1.S1_x_at6/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.19099.1.S1_x_at2/115+4718336..4721254retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49162.1.S1_at--184--3071Chr05:4692703..4692727 (25 bp)
AATCTCTATCTTGGGATTTCGGGAA
LOC_Os05g08610
Os.49162.1.S1_at--92--5511Chr05:4692758..4692782 (25 bp)
GAAACAATCAATGCCTTGGGAACAT
LOC_Os05g08610
Os.49162.1.S1_at--698--2911Chr05:4692860..4692884 (25 bp)
AAGGAGCGAGTCATTTCTGCAGAAG
LOC_Os05g08610
Os.49162.1.S1_at--785--3831Chr05:4693003..4693027 (25 bp)
CTGCTTGGCCAGATATGTCGATAAC
LOC_Os05g08610
Os.49162.1.S1_at--230--4051Chr05:4693021..4693045 (25 bp)
CGATAACGATGATCTCCGAGAGCTC
LOC_Os05g08610
Os.49162.1.S1_at--112--291Chr05:4693127..4693151 (25 bp)
ATAGATGGTGTCTCCACAAGTGCTC
LOC_Os05g08610
Os.49162.1.S1_at--351--2231Chr05:4693142..4693166 (25 bp)
ACAAGTGCTCCAGCCATTGGCTTTG
LOC_Os05g08610
Os.49162.1.S1_at--258--9331Chr05:4693171..4693195 (25 bp)
TCGCCACAGCGACAACAGGGTAGGA
LOC_Os05g08610
Os.49162.1.S1_at--50--5251Chr05:4693205..4693229 (25 bp)
GAATCACAACTATAACTCTCTTCCC
LOC_Os05g08610
Os.49162.1.S1_at--245--8571Chr05:4693245..4693269 (25 bp)
TGGATCACGCCTTTGATGAGGCCTT
LOC_Os05g08610
Os.49162.1.S1_at--691--4311Chr05:4693266..4693290 (25 bp)
CCTTCCACACATCAACCTGTAAATT
LOC_Os05g08610
Target Sequence 
AATCTCTATCTTGGGATTTCGGGAAGATCTAAACCAAAACAGAGGAGCTAGTGCGGAAACAATCAATGCCTTGGGAACAT
GCAAGTTCAAGTCAAAGAAAACTCGTGATGGAGATGGAAACGAAGTTGGTGTCGGTGTTGTGGCTGCTGGAACAAACAAG
GAGCGAGTCATTTCTGCAGAAGATGCTGTCTGCTGCATCTGCTTGGCCAGATATGTCGATAACGATGATCTCCGAGAGCT
CCCTTGTGCGCACTTCTTCCACAAGGATTGTGTGGACAAATGGCTCAAGATAAACGCGCTGTGCCCCCTTTGCAAGGCTG
AGATAGATGGTGTCTCCACAAGTGCTCCAGCCATTGGCTTTGGGCGTCGCCACAGCGACAACAGGGTAGGAAACGACATT
GAATCACAACTATAACTCTCTTCCCACTTCGTTGGCAGCGTGGATCACGCCTTTGATGAGGCCTTCCACACATCAACCTG
TAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis