Browse Element(s) Details


Os.10348.1.S1_at

Description gb:AK063325.1
DB_XREF= gi:32973343
TID=Os.10348.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H06, full insert sequence.
FL= gb:AK102671.1 gb:AK063325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4143011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein
LOC_Os01g41420Os.10355.1.S1_x_at4/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.10355.1.S1_at2/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.22840.1.A1_at1/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41430Os.10348.1.S1_at11/111+23782922..23784883UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g41440NANA1+23788034..23789476hypothetical protein
LOC_Os01g41450NANA1+23790584..23792033Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g41460NANA1+23799067..23801318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41470NANA1+23805826..23807071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41480NANA1+23809263..23811906retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10348.1.S1_at--654--6691Chr01:23784426..23784450 (25 bp)
GTTCGTCGCACGACGACGTTGGACG
LOC_Os01g41430
Os.10348.1.S1_at--864--1811Chr01:23784472..23784496 (25 bp)
ACGCCGGACCTCTGTTGACGTATGA
LOC_Os01g41430
Os.10348.1.S1_at--203--2611Chr01:23784516..23784540 (25 bp)
AACGCCGTCGGATGGTGACCGGACA
LOC_Os01g41430
Os.10348.1.S1_at--208--8911Chr01:23784531..23784555 (25 bp)
TGACCGGACAGCACACGCGTTGTAA
LOC_Os01g41430
Os.10348.1.S1_at--782--2171Chr01:23784543..23784567 (25 bp)
ACACGCGTTGTAAAATTCTGGTTAT
LOC_Os01g41430
Os.10348.1.S1_at--352--3371Chr01:23784575..23784599 (25 bp)
CATGAGTATAACGTTGAGCGGCCCC
LOC_Os01g41430
Os.10348.1.S1_at--482--4192Chr12:1641786..1641811 (23 bp)
CCCGCAATTGCGCAGCTAGCATTAA
NONE
Os.10348.1.S1_at--396--2451Chr01:23784659..23784683 (25 bp)
AAAATTATCATTTCCGTGATTCTAA
LOC_Os01g41430
Os.10348.1.S1_at--535--2331Chr01:23784701..23784725 (25 bp)
AAAGCTATGCCAATCGTTACCCTTT
LOC_Os01g41430
Os.10348.1.S1_at--607--10414Chr01:23784743..23784767 (25 bp)
TTATTTGCTTACTTGATCTACCACT
LOC_Os01g41430
Os.10348.1.S1_at--242--8511Chr01:23784857..23784881 (25 bp)
TGGAAGTATCATCAAACATCGCCAA
LOC_Os01g41430
Target Sequence 
GTTCGTCGCACGACGACGTTGGACGGCTGATGGACGCGTTGATGGCACGCCGGACCTCTGTTGACGTATGAGGTGGCGGT
TGACGTGAGGAACGCCGTCGGATGGTGACCGGACAGCACACGCGTTGTAAAATTCTGGTTATACATATACATGAGTATAA
CGTTGAGCGGCCCCCGCAATTGCGCAGCTAGCATTAATTTAAAATTATCTATTTTTTATATATGATTTTATTTAAAATTA
TCATTTCCGTGATTCTAATAATTTTATAGTTTTTAAAAGCTATGCCAATCGTTACCCTTTACTCCTTTGTATCCTTTTTA
TTTGCTTACTTGATCTACCACTATTTATATTCATCATCTTTAGAACTTTAAAAATTAGGCCTTATAGTTTTCAGAGTTCA
TTTTCTTGATGGATTTCTTATTCATAATTTTTGGAAGTATCATCAAACATCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis