Browse Element(s) Details


Os.10355.1.S1_at

Description gb:AU056799
DB_XREF= gi:4715683
DB_XREF=AU056799
CLONE=S20882_2Z
TID=Os.10355.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10355 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189538.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g414202/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein
LOC_Os01g41420Os.10355.1.S1_x_at4/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.10355.1.S1_at2/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.22840.1.A1_at1/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41430Os.10348.1.S1_at11/111+23782922..23784883UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g41440NANA1+23788034..23789476hypothetical protein
LOC_Os01g41450NANA1+23790584..23792033Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g41460NANA1+23799067..23801318retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10355.1.S1_at--103--7751NONE
GGTGAACCCGATGTCCATAGTACGC
NONE
Os.10355.1.S1_at--657--7071NONE
GTGAACCCGATGTCCATAGTACGCC
NONE
Os.10355.1.S1_at--1040--8971NONE
TGAACCCGATGTCCATAGTACGCCT
NONE
Os.10355.1.S1_at--78--5451NONE
GAACCCGATGTCCATAGTACGCCTG
NONE
Os.10355.1.S1_at--377--2611NONE
AACCCGATGTCCATAGTACGCCTGC
NONE
Os.10355.1.S1_at--24--1811NONE
ACCCGATGTCCATAGTACGCCTGCT
NONE
Os.10355.1.S1_at--157--1191NONE
AGTACGCCTGCTCGTGGCCCGATCA
NONE
Os.10355.1.S1_at--1011--9411NONE
TCGTGGCCCGATCACGCGCCGTCGA
NONE
Os.10355.1.S1_at--185--7551NONE
GTGGCCCGATCACGCGCCGTCGAGG
NONE
Os.10355.1.S1_at--641--4751Chr01:23775313..23775337 (25 bp)
GCTGCTAGGAGTGTTCGTCGCCGTC
LOC_Os01g41420
Os.10355.1.S1_at--660--4391Chr01:23775371..23775395 (25 bp)
GCCACTTTCTGAGGTGGTTGGTTGC
LOC_Os01g41420
Target Sequence 
GGTGAACCCGATGTCCATAGTACGCCTGCTCGTGGCCCGATCACGCGCCGTCGAGGAGAGGCTGTCTCTGACGCGNGGCA
GCNGNNCCGGNGAGGGTGGCCATCAGCACCGCCATCCTCGCCAGCACGGTGGTGNTGGCGTCNGACNGGTGCCCTTCTTC
GGCTACCTCATGTCATTCATCGGCTCGTTCCTCAGCGTCATGGCGACCGTGCTGTTCCCTTGCCTCTGCTACCTCAAGAT
CTACAAGGCCGATGGCATCCACCGCACGGAGATGGTGGCCATCGCCGGAATTCTGCTGCTAGGAGTGTTCGTCGCCGTCA
CCGGCACGTACACTTCTTTGCTGCAGATTATAGCCACTTTCTGAGGTGGTTGGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis