Browse Element(s) Details


Os.10453.1.S1_at

Description gb:AK067114.1
DB_XREF= gi:32977132
TID=Os.10453.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095K16, full insert sequence.
FL= gb:AK067114.1 gb:AK105701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3670011/11T-complex protein 1, epsilon subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36690NANA6+21575297..21575551hypothetical protein
LOC_Os06g36700Os.10453.1.S1_at11/116+21597232..21601679T-complex protein 1, epsilon subunit, putative, expressed
LOC_Os06g36710Os.56281.1.S1_at11/116+21613169..21616123transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g36720OsAffx.31069.1.S1_x_at1/116+21618568..21620890retrotransposon protein, putative, unclassified
LOC_Os06g36730OsAffx.20387.1.S1_x_at1/116+21622424..21628581retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10453.1.S1_at--46--1371Chr06:21597779..21597803 (25 bp)
AGAGCAATCCTCACTGTGGCATTGA
LOC_Os06g36700
Os.10453.1.S1_at--387--10431Chr06:21597632..21597656 (25 bp)
TTATCTCGCCTTCTGACTATTGATG
LOC_Os06g36700
Os.10453.1.S1_at--894--8471Chr06:21597568..21597592 (25 bp)
TGGCGACAAGCACTTCCAGTAGGCT
LOC_Os06g36700
Os.10453.1.S1_at--417--6931Chr06:21597550..21597574 (25 bp)
GTAGGCTCTACATTTTCTGTCGATC
LOC_Os06g36700
Os.10453.1.S1_at--806--2051Chr06:21597513..21597537 (25 bp)
ACATTTACGCCATGGGTTTGCTTGC
LOC_Os06g36700
Os.10453.1.S1_at--813--4151Chr06:21597428..21597452 (25 bp)
CGCCCGCACTTTGTATAGCTTGAGA
LOC_Os06g36700
Os.10453.1.S1_at--1158--3151Chr06:21597395..21597419 (25 bp)
CAATCCCTTTGAAGCTGGCCTAGAA
LOC_Os06g36700
Os.10453.1.S1_at--482--7311Chr06:21597345..21597369 (25 bp)
GTGCTGCTCAGATTCGTAGATGCTA
LOC_Os06g36700
Os.10453.1.S1_at--402--10711Chr06:21597314..21597338 (25 bp)
TTGCGCGCTGTGGTAGTATCGTATT
LOC_Os06g36700
Os.10453.1.S1_at--797--10151Chr06:21597298..21597322 (25 bp)
TATCGTATTGTGTTCTGCATCGTCC
LOC_Os06g36700
Os.10453.1.S1_at--707--7231Chr06:21597277..21597301 (25 bp)
GTCCGCATGTACTCTACTTTTCTTA
LOC_Os06g36700
Target Sequence 
AGAGCAATCCTCACTGTGGCATTGACTGCAACGATGTTGGGACAAACCACATGAAGGAACAAAATGTTTTTGAAACACTG
ATAGGCAAGCAGCAGCAGATCTTACTGGCAACCCAGGTGGTGAAGATGATTCTCAAGATCGATGATGTTATCTCGCCTTC
TGACTATTGATGATGCTTTTGAAGACTATGGAGTTTATTGTGCTAGGGCCTTGGCGACAAGCACTTCCAGTAGGCTCTAC
ATTTTCTGTCGATCGGTTTTTGATTAACATTTACGCCATGGGTTTGCTTGCTTGTGCTATTTGATGAGCTATCTGTTTGT
GTGAACTTAACTTTTGGTACTTTGTTTTTCGCGCCCGCACTTTGTATAGCTTGAGACAATAGCACAATCCCTTTGAAGCT
GGCCTAGAAGTTTGAGTAGCTACCATTTGCTCTTGTGCTGCTCAGATTCGTAGATGCTATATAGGTTGCGCGCTGTGGTA
GTATCGTATTGTGTTCTGCATCGTCCGCATGTACTCTACTTTTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis