Browse Element(s) Details


Os.10505.1.S1_a_at

Description gb:AK065054.1
DB_XREF= gi:32975072
TID=Os.10505.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0053C23.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001J01, full insert sequence.
FL= gb:AK065054.1 gb:AK070172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3901011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10505.1.S1_a_at--917--2151Chr10:20463324..20463348 (25 bp)
ACAGCGGCGCGCACCTGCCACGGGA
LOC_Os10g39010
Os.10505.1.S1_a_at--137--4711Chr10:20463321..20463345 (25 bp)
GCGGCGCGCACCTGCCACGGGACAT
LOC_Os10g39010
Os.10505.1.S1_a_at--850--3791Chr10:20463271..20463295 (25 bp)
CTCGCGCCCGATGCTTCGGCGGACG
LOC_Os10g39010
Os.10505.1.S1_a_at--995--4131Chr10:20463269..20463293 (25 bp)
CGCGCCCGATGCTTCGGCGGACGCC
LOC_Os10g39010
Os.10505.1.S1_a_at--188--2591Chr10:20463193..20463217 (25 bp)
AACGTGTTCTCGCAGATTATGTCCC
LOC_Os10g39010
Os.10505.1.S1_a_at--244--1911Chr10:20463192..20463216 (25 bp)
ACGTGTTCTCGCAGATTATGTCCCG
LOC_Os10g39010
Os.10505.1.S1_a_at--862--3991Chr10:20463191..20463215 (25 bp)
CGTGTTCTCGCAGATTATGTCCCGC
LOC_Os10g39010
Os.10505.1.S1_a_at--50--7431Chr10:20463190..20463214 (25 bp)
GTGTTCTCGCAGATTATGTCCCGCG
LOC_Os10g39010
Os.10505.1.S1_a_at--1031--8791Chr10:20463189..20463213 (25 bp)
TGTTCTCGCAGATTATGTCCCGCGA
LOC_Os10g39010
Os.10505.1.S1_a_at--98--6731Chr10:20463188..20463212 (25 bp)
GTTCTCGCAGATTATGTCCCGCGAT
LOC_Os10g39010
Os.10505.1.S1_a_at--521--10591Chr10:20463187..20463211 (25 bp)
TTCTCGCAGATTATGTCCCGCGATG
LOC_Os10g39010
Target Sequence 
ACAGCGGCGCGCACCTGCCACGGGACATCGTCGTGGCGAGGCGAGTGGCGCCGCTCGCGCCCGATGCTTCGGCGGACGCC
GCCGGAGACGACATGAGCTGGTCGGAGACGGCGAGCTTCACGGCGACGGGCAACGTGTTCTCGCAGATTATGTCCCGCGA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10505.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis