Browse Element(s) Details


Os.10731.1.A1_at

Description gb:AK106894.1
DB_XREF= gi:32992103
TID=Os.10731.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G10, full insert sequence.
FL= gb:AK106894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g474341/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g419501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47432NANA11+27983852..27988355Zinc knuckle family protein
LOC_Os11g47433NANA11+27999861..28000094hypothetical protein
LOC_Os11g47434Os.10731.1.A1_a_at9/1111+28009208..28012158transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47434Os.48015.1.A1_x_at3/1111+28009208..28012158transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47434Os.10731.1.A1_at1/1111+28009208..28012158transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47435NANA11+28015080..28015598transposon protein, putative, unclassified
LOC_Os11g47436NANA11+28016558..28019075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47437OsAffx.7442.1.S1_at11/1111+28025002..28025367hypothetical protein
LOC_Os11g47438NANA11+28028037..28032540Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10731.1.A1_at--915--9327Chr12:11445576..11445595 (20 bp)
AGGACTTAGTGCCTCTTAAGAGGTG
NONE
Os.10731.1.A1_at--1057--2592Chr07:24860277..24860301 (25 bp)
AACGCCGCGCGGGAGATGACGTAGC
NONE
Os.10731.1.A1_at--566--6211Chr07:24860348..24860372 (25 bp)
GAGGCCGGCCACAGCAAGTACAAGA
NONE
Os.10731.1.A1_at--919--5131Chr07:24860423..24860447 (25 bp)
GCAACCATCGGCACTACAAGTTTGT
NONE
Os.10731.1.A1_at--1006--10231Chr07:24860443..24860467 (25 bp)
TTTGTAATTCCAGATCGCGCGCGTG
NONE
Os.10731.1.A1_at--501--1291Chr07:24860454..24860478 (25 bp)
AGATCGCGCGCGTGGAGACCAACGA
NONE
Os.10731.1.A1_at--380--4571Chr07:24860459..24860483 (25 bp)
GCGCGCGTGGAGACCAACGAACAAT
NONE
Os.10731.1.A1_at--63--2731Chr07:24860506..24860530 (25 bp)
AAGCAGAGTGAAAGGTGCGGCCACT
NONE
Os.10731.1.A1_at--323--9051Chr07:24860521..24860545 (25 bp)
TGCGGCCACTGGTGGTAAAGCTAGT
NONE
Os.10731.1.A1_at--173--9831Chr07:24860536..24860560 (25 bp)
TAAAGCTAGTGGTAACTGGTTTTAT
NONE
Os.10731.1.A1_at--707--9811Chr07:24860548..24860572 (25 bp)
TAACTGGTTTTATAGAGGATTGCAA
NONE
Target Sequence 
AGGACTTAGTGCCTCTTAAGAGGTGGAAGTAGACCTGCGGGTTCGCCAGGAACGCCGCGCGGGAGATGACGTAGCCGGCG
GCGCCCGGCGCCTTCATCATATCATCGCCGCCGCCGGCGCCGAGGCCGGCCACAGCAAGTACAAGAAGGCGGTCGACCCG
ACGCCCACGGCCACGGCAGCGATCATCGACGGCGCCGCAACCATCGGCACTACAAGTTTGTAATTCCAGATCGCGCGCGT
GGAGACCAACGAACAATGGAGGAGATCGACGAAGAGATCAAGCAGAGTGAAAGGTGCGGCCACTGGTGGTAAAGCTAGTG
GTAACTGGTTTTATAGAGGATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10731.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis