Browse Element(s) Details


OsAffx.7442.1.S1_at

Description tigr:9639.m04419
TID=OsAffx.7442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4743111/11hypothetical protein
LOC_Os11g4743711/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47400NANA11+27957191..27958430hypothetical protein
LOC_Os11g47410OsAffx.19419.1.S1_at11/1111+27958965..27960942AT hook motif-containing protein, putative
LOC_Os11g47420Os.31312.5.S1_x_at3/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47420Os.31312.2.S1_x_at2/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47430NANA11+27967917..27974072retrotransposon protein, putative, unclassified
LOC_Os11g47431OsAffx.7442.1.S1_at11/1111+27980857..27981222hypothetical protein
LOC_Os11g47432NANA11+27983852..27988355Zinc knuckle family protein
LOC_Os11g47433NANA11+27999861..28000094hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7442.1.S1_at--968--6352Chr11:28025032..28025056 (25 bp)
GATCCACAGCATGCATGCCAAAATC
LOC_Os11g47437
OsAffx.7442.1.S1_at--100--1532Chr11:28025039..28025063 (25 bp)
AGCATGCATGCCAAAATCATTTCAT
LOC_Os11g47437
OsAffx.7442.1.S1_at--612--3072Chr11:28025053..28025077 (25 bp)
AATCATTTCATGCAACATGTGAAAC
LOC_Os11g47437
OsAffx.7442.1.S1_at--698--772Chr11:28025069..28025093 (25 bp)
ATGTGAAACACCATCCCAGGTTGCT
LOC_Os11g47437
OsAffx.7442.1.S1_at--829--5534Chr11:28025073..28025097 (25 bp)
GAAACACCATCCCAGGTTGCTACTA
LOC_Os11g47437
OsAffx.7442.1.S1_at--232--4853Chr11:28025091..28025115 (25 bp)
GCTACTACTGCAAGCAATCGACCAA
LOC_Os11g47437
OsAffx.7442.1.S1_at--223--534Chr11:28025107..28025131 (25 bp)
ATCGACCAATGGCTCACCGGTAAAG
LOC_Os11g47437
OsAffx.7442.1.S1_at--450--7873Chr11:28025176..28025200 (25 bp)
GGTTTGATCTCCCTCTCCGGTGCAC
LOC_Os11g47437
OsAffx.7442.1.S1_at--430--7332Chr11:28025195..28025219 (25 bp)
GTGCACCATTATCCGGGGTTCTTGA
LOC_Os11g47437
OsAffx.7442.1.S1_at--104--3792Chr11:28025264..28025288 (25 bp)
CTCGGCTTGGCTTGGTCCAGAGTGG
LOC_Os11g47437
OsAffx.7442.1.S1_at--989--3592Chr11:28025274..28025298 (25 bp)
CTTGGTCCAGAGTGGTTGGAACGAC
LOC_Os11g47437
Target Sequence 
GATCCACAGCATGCATGCCAAAATCATTTCATGCAACATGTGAAACACCATCCCAGGTTGCTACTACTGCAAGCAATCGA
CCAATGGCTCACCGGTAAAGGCGGAGTCGGCCATGGCAACGGCGGTGGGCGCCGAGGAAGAAGGGGTTTGATCTCCCTCT
CCGGTGCACCATTATCCGGGGTTCTTGAGGGTAAATGGAGAGGAGGTCGTGGTGATGAAGATGGCGCGGTGGCTCGGCTT
GGCTTGGTCCAGAGTGGTTGGAACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis