Browse Element(s) Details


OsAffx.19419.1.S1_at

Description tigr:9639.m04416
TID=OsAffx.19419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4741011/11AT hook motif-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified
LOC_Os11g47370Os.18443.1.S1_at7/1111+27938905..27941284expressed protein
LOC_Os11g47379NANA11+27942471..27943166NA
LOC_Os11g47390OsAffx.7441.1.S1_at11/1111+27950341..27952587laccase, putative
LOC_Os11g47390OsAffx.29827.1.S1_at1/1111+27950341..27952587laccase, putative
LOC_Os11g47400NANA11+27957191..27958430hypothetical protein
LOC_Os11g47410OsAffx.19419.1.S1_at11/1111+27958965..27960942AT hook motif-containing protein, putative
LOC_Os11g47420Os.31312.5.S1_x_at3/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47420Os.31312.2.S1_x_at2/1111+27963991..27967292retrotransposon protein, putative, unclassified
LOC_Os11g47430NANA11+27967917..27974072retrotransposon protein, putative, unclassified
LOC_Os11g47431OsAffx.7442.1.S1_at11/1111+27980857..27981222hypothetical protein
LOC_Os11g47432NANA11+27983852..27988355Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19419.1.S1_at--77--2391Chr11:27960056..27960080 (25 bp)
AAACTTGCTGGACAACTACCGTGAA
LOC_Os11g47410
OsAffx.19419.1.S1_at--357--951Chr11:27960094..27960118 (25 bp)
AGGAAAGAGCTATCCTATGCCCAAG
LOC_Os11g47410
OsAffx.19419.1.S1_at--845--5671Chr11:27960179..27960203 (25 bp)
GACATACCTAAGCTGTGACACCGTT
LOC_Os11g47410
OsAffx.19419.1.S1_at--556--8071Chr11:27960233..27960257 (25 bp)
GGAGCACATGTATCCTACCGAGTTC
LOC_Os11g47410
OsAffx.19419.1.S1_at--317--9711Chr11:27960259..27960283 (25 bp)
TCAACACGTTGAAATTCCCTGGAAT
LOC_Os11g47410
OsAffx.19419.1.S1_at--568--10491Chr11:27960298..27960322 (25 bp)
TTAAGCTTAAAGTAGGCCTGCCTGT
LOC_Os11g47410
OsAffx.19419.1.S1_at--368--9191Chr11:27960316..27960340 (25 bp)
TGCCTGTCATGCTACTTCGTAACAT
LOC_Os11g47410
OsAffx.19419.1.S1_at--442--2551Chr11:27960347..27960371 (25 bp)
AACTGCAGGCCTATGCAACGGCACG
LOC_Os11g47410
OsAffx.19419.1.S1_at--869--7571Chr11:27960827..27960851 (25 bp)
GGGCGGTAGCATTCTCTAGAGTCAC
LOC_Os11g47410
OsAffx.19419.1.S1_at--84--1171Chr11:27960846..27960870 (25 bp)
AGTCACAAACCGAAATGGCCTGAAG
LOC_Os11g47410
OsAffx.19419.1.S1_at--72--10791Chr11:27960878..27960902 (25 bp)
TTGATGATTCAGATTGTCCCGAAGA
LOC_Os11g47410
Target Sequence 
AAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGG
AAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATG
ACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGA
ACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAA
TGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGATTCTCAGA
AGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAG
GGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis