Browse Element(s) Details


Os.10841.1.S1_at

Description gb:AK068151.1
DB_XREF= gi:32978169
TID=Os.10841.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132L05, full insert sequence.
FL= gb:AK068151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1877011/11Wound-induced protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18740Os.5616.1.S1_at11/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g18740Os.34729.2.S1_x_at1/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g18750NANA3+10489860..10490242hypothetical protein
LOC_Os03g18760OsAffx.12928.1.S1_at1/113+10492607..10493209hypothetical protein
LOC_Os03g18770Os.10841.1.S1_at11/113+10496193..10497392Wound-induced protein 1, putative, expressed
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10841.1.S1_at--988--7251Chr03:10496596..10496620 (25 bp)
GTCCTCGCCATCTAAGAACGAACTC
LOC_Os03g18770
Os.10841.1.S1_at--1124--2751Chr03:10496569..10496593 (25 bp)
AAGACATCAAGAACTCAAGGCGCAA
LOC_Os03g18770
Os.10841.1.S1_at--175--2391Chr03:10496470..10496494 (25 bp)
AAACGGAAGCGCACGCACTGAGTGA
LOC_Os03g18770
Os.10841.1.S1_at--333--10431Chr03:10496422..10496446 (25 bp)
TTATGGGCTAAAGCCGCTCAGCTCA
LOC_Os03g18770
Os.10841.1.S1_at--639--1971Chr03:10496397..10496421 (25 bp)
ACTGAGCTGCTTCAGGTTTGCGTGA
LOC_Os03g18770
Os.10841.1.S1_at--334--10291Chr03:10496381..10496405 (25 bp)
TTTGCGTGATTAATCCCACTACCAC
LOC_Os03g18770
Os.10841.1.S1_at--681--1971Chr03:10496355..10496379 (25 bp)
ACTGCAACTAGCCAGCCAGTTAAGT
LOC_Os03g18770
Os.10841.1.S1_at--62--5251Chr03:10496299..10496323 (25 bp)
GAATCAGCAGTGTGACCAGTAGCAT
LOC_Os03g18770
Os.10841.1.S1_at--960--371Chr03:10496276..10496300 (25 bp)
ATCAGTAGCTTTGGTCCAAGTCATT
LOC_Os03g18770
Os.10841.1.S1_at--386--751Chr03:10496244..10496268 (25 bp)
ATGTAAGTGTGTACTCCTTCCACGG
LOC_Os03g18770
Os.10841.1.S1_at--294--8691Chr03:10496235..10496259 (25 bp)
TGTACTCCTTCCACGGTAAAGCTAA
LOC_Os03g18770
Target Sequence 
GTCCTCGCCATCTAAGAACGAACTCAAAAGACATCAAGAACTCAAGGCGCAAAAAGCTTCCCTAAATTAATCACATATAA
AAAAAATCAAGCGATACTTATCAATAGTGATTAGCTAAATAAATAAAAACGGAAGCGCACGCACTGAGTGAAGTCACTAG
CTATAGTTTATTGCTTATGGGCTAAAGCCGCTCAGCTCAACTGAGCTGCTTCAGGTTTGCGTGATTAATCCCACTACCAC
TACTGCAACTAGCCAGCCAGTTAAGTAGTGNTGCTTTTGCTTGCTTGTCTGAAAGCTGAATCAGCAGTGTGACCAGTAGC
ATCAGTAGCTTTGGTCCAAGTCATTATGGATTATGTAAGTGTGTACTCCTTCCACGGTAAAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis