Browse Element(s) Details


Os.10866.1.S1_at

Description gb:AU068225
DB_XREF= gi:5003116
DB_XREF=AU068225
CLONE=C12511_12Z
TID=Os.10866.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10866 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl1 proteasome subunit mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0852011/11Proteasome subunit beta type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08500Os.27847.1.S1_at11/112+4573823..4578355myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g08510NANA2+4594749..4595333expressed protein
LOC_Os02g08520Os.10866.1.S1_at11/112+4598612..4601355Proteasome subunit beta type 3, putative, expressed
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10866.1.S1_at--751--5991Chr02:4599261..4599285 (25 bp)
GAGACGATCTCACAAGCGCTGCAGG
LOC_Os02g08520
Os.10866.1.S1_at--143--4771Chr02:4599244..4599268 (25 bp)
GCTGCAGGCTTCTGTTGATCGAGAT
LOC_Os02g08520
Os.10866.1.S1_at--982--7491Chr02:4599078..4599227 (25 bp)
GTGGTTATGTTCTCCTTGTGACTCC
LOC_Os02g08520
Os.10866.1.S1_at--339--10831Chr02:4599063..4599083 (21 bp)
TTGTGACTCCCACAGAGGTTCAGGA
LOC_Os02g08520
Os.10866.1.S1_at--848--6231Chr02:4599020..4599044 (25 bp)
GATGGACTGAGTGCTCGCCCGTAGA
LOC_Os02g08520
Os.10866.1.S1_at--353--6371Chr02:4598959..4598983 (25 bp)
GATCGATTATCCTGTACAACTGCCT
LOC_Os02g08520
Os.10866.1.S1_at--178--391Chr02:4598872..4598896 (25 bp)
ATCACCGTTGATTCCTTATCTTCAT
LOC_Os02g08520
Os.10866.1.S1_at--818--10591Chr02:4598833..4598857 (25 bp)
TTCTGCTTTCCTTCACATAGCATGG
LOC_Os02g08520
Os.10866.1.S1_at--508--1451Chr02:4598763..4598787 (25 bp)
AGAAGCTTTGGCCTGCTTGGCTCAG
LOC_Os02g08520
Os.10866.1.S1_at--630--8311Chr02:4598745..4598769 (25 bp)
GGCTCAGGTGACAAATCCATTCCAG
LOC_Os02g08520
Os.10866.1.S1_at--1096--8131Chr02:4598717..4598741 (25 bp)
GGACAGGCTTCAAATTCTGCTGCTG
LOC_Os02g08520
Target Sequence 
GAGACGATCTCACAAGCGCTGCAGGCTTCTGTTGATCGAGATTGCCTGAGTGGCTGGGGTGGTTATGTTCTCCTTGTGAC
TCCCACAGAGGTTCAGGAGAGAGTGATCAAGGGAANGGATGGACTGAGTGCTCGCCCGTAGACCTANATCGCGTAGGGGA
TGGTTCGTTCGTTCGATCGATCGATTATCCTGTACAACTGCCTACAGAACTAGGNAAAACATGTGTGGNTCTATTTACTT
CTCAAGAAACATCACAGCATGAATGGTATCACCGTTGATTCCTTATCTTCATANCCCCTNAGGGTTCTTCTGCTTTCCTT
CACATAGCATGGAATTATTAAACATGCTCTTGCAGCACAACCGTGCAAGAAACNGCAAGAAGCTTTGGCCTGCTTGGCTC
AGGTGACAAATCCATTCCAGTGTGGACAGGCTTCAAATTCTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis