Browse Element(s) Details


Os.27847.1.S1_at

Description gb:AK100530.1
DB_XREF= gi:32985739
TID=Os.27847.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101H04, full insert sequence.
FL= gb:AK100530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0850011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed
LOC_Os02g08500Os.27847.1.S1_at11/112+4573823..4578355myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g08510NANA2+4594749..4595333expressed protein
LOC_Os02g08520Os.10866.1.S1_at11/112+4598612..4601355Proteasome subunit beta type 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27847.1.S1_at--1063--6671Chr02:4574842..4574866 (25 bp)
GTTGCCCAACCTTAGCTTAGACAAT
LOC_Os02g08500
Os.27847.1.S1_at--361--8211Chr02:4574786..4574810 (25 bp)
GGAATACGGGCATTGTTTCTCCCAT
LOC_Os02g08500
Os.27847.1.S1_at--308--6431Chr02:4574706..4574730 (25 bp)
GATCTTATGCGGACAACTGGGCTGC
LOC_Os02g08500
Os.27847.1.S1_at--510--8711Chr02:4574195..4574671 (25 bp)
TGTTGACATGTTTAGGCCGGACCGC
LOC_Os02g08500
Os.27847.1.S1_at--363--191Chr02:4574113..4574137 (25 bp)
ATTTCAATCATTAGTCCGCGTACGA
LOC_Os02g08500
Os.27847.1.S1_at--541--9931Chr02:4574093..4574117 (25 bp)
TACGAGGTTTTTCTGCATTCGCGGT
LOC_Os02g08500
Os.27847.1.S1_at--944--7451Chr02:4574070..4574094 (25 bp)
GTGTCGGCTGCTGATTGGTCCATGC
LOC_Os02g08500
Os.27847.1.S1_at--898--7491Chr02:4574028..4574052 (25 bp)
GTGGTGTTCATAGTGGCTAGCCTTC
LOC_Os02g08500
Os.27847.1.S1_at--802--8491Chr02:4574015..4574039 (25 bp)
TGGCTAGCCTTCATCACAAGTGCAT
LOC_Os02g08500
Os.27847.1.S1_at--402--7331Chr02:4573996..4574020 (25 bp)
GTGCATTTCACATTTGGCTTCTTTT
LOC_Os02g08500
Os.27847.1.S1_at--521--151Chr02:4573956..4573980 (25 bp)
ATTAGTTGGCCAGTCAGTCTGTGAA
LOC_Os02g08500
Target Sequence 
GTTGCCCAACCTTAGCTTAGACAATCCGGCTGTACCAANGCAGACACTGGATCGTGGGAATACGGGCATTGTTTCTCCCA
TGCAAGATGGAAGGATTCATCACCAAGCTGTTAGCAATCAGCTAAACTATAATGACGATCTTATGCGGACAACTGGGCTG
CAAAGGGGTCTCAGTGGTGGTCTAGATGACATTGTTGTTGACATGTTTAGGCCGGACCGCGAAGACGACGGCGTTCCTTA
CATCGATGGGGACTGGGAGCTGGTCTAGCCAGCCTCCATTTCAATCATTAGTCCGCGTACGAGGTTTTTCTGCATTCGCG
GTGTCGGCTGCTGATTGGTCCATGCTCACTTGTCAGCACAAAGTGGTGTTCATAGTGGCTAGCCTTCATCACAAGTGCAT
TTCACATTTGGCTTCTTTTTTCAGCTTAGTGATTATTAGTTGGCCAGTCAGTCTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis