Browse Element(s) Details


OsAffx.11942.1.S1_at

Description tigr:9630.m00805
TID=OsAffx.11942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0846011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08440Os.12032.1.S1_at11/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08440OsAffx.24166.1.S1_at9/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed
LOC_Os02g08500Os.27847.1.S1_at11/112+4573823..4578355myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11942.1.S1_at--4--1691Chr02:4557076..4557100 (25 bp)
AGCCATGGCCCCCAATTGGGACTTT
LOC_Os02g08460
OsAffx.11942.1.S1_at--716--8071Chr02:4557102..4557126 (25 bp)
GGAGCATCATATGGCACTTTGCGAT
LOC_Os02g08460
OsAffx.11942.1.S1_at--30--851Chr02:4557112..4557136 (25 bp)
ATGGCACTTTGCGATTTGCGACGAA
LOC_Os02g08460
OsAffx.11942.1.S1_at--357--10271Chr02:4557119..4557143 (25 bp)
TTTGCGATTTGCGACGAACGTCGGC
LOC_Os02g08460
OsAffx.11942.1.S1_at--778--7571Chr02:4557155..4557179 (25 bp)
GGGCGATCCAATTGGCCATGCTTGC
LOC_Os02g08460
OsAffx.11942.1.S1_at--96--591Chr02:4557160..4557184 (25 bp)
ATCCAATTGGCCATGCTTGCGAGCA
LOC_Os02g08460
OsAffx.11942.1.S1_at--1139--3171Chr02:4557164..4557188 (25 bp)
AATTGGCCATGCTTGCGAGCAGATG
LOC_Os02g08460
OsAffx.11942.1.S1_at--139--9071Chr02:4557173..4557197 (25 bp)
TGCTTGCGAGCAGATGGGTTGTTTC
LOC_Os02g08460
OsAffx.11942.1.S1_at--58--1531Chr02:4557181..4557205 (25 bp)
AGCAGATGGGTTGTTTCTCCGTGGA
LOC_Os02g08460
OsAffx.11942.1.S1_at--1019--7891Chr02:4557189..4557213 (25 bp)
GGTTGTTTCTCCGTGGAGTTGTAGT
LOC_Os02g08460
OsAffx.11942.1.S1_at--563--3991Chr02:4557200..4557224 (25 bp)
CGTGGAGTTGTAGTGGTGGCTTTCT
LOC_Os02g08460
Target Sequence 
AGCCATGGCCCCCAATTGGGACTTTGGGAGCATCATATGGCACTTTGCGATTTGCGACGAACGTCGGCGATGGATGATGG
GGCGATCCAATTGGCCATGCTTGCGAGCAGATGGGTTGTTTCTCCGTGGAGTTGTAGTGGTGGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis