Browse Element(s) Details


Os.5574.1.S1_s_at

Description gb:AA231654
DB_XREF= gi:1854320
DB_XREF=RZ87.F
CLONE=RZ87
TID=Os.5574.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5574 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565586.1 (A.thaliana) HSP100ClpB, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0849011/11Chaperone clpB 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08440Os.12032.1.S1_at11/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08440OsAffx.24166.1.S1_at9/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed
LOC_Os02g08500Os.27847.1.S1_at11/112+4573823..4578355myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g08510NANA2+4594749..4595333expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043335biological_processprotein unfolding
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5574.1.S1_s_at--756--8891Chr02:4568316..4568340 (25 bp)
TGAGTACATTGTATTCCAGCCGCTG
LOC_Os02g08490
Os.5574.1.S1_s_at--177--3391Chr02:4568300..4568324 (25 bp)
CAGCCGCTGGACACCACAGAGATAA
LOC_Os02g08490
Os.5574.1.S1_s_at--1157--7511Chr02:4568132..4568291 (25 bp)
GTGGAGATCCAGCTGAACCGAGTCA
LOC_Os02g08490
Os.5574.1.S1_s_at--539--5351Chr02:4568088..4568112 (25 bp)
GAAGATTCATCTGCAGTACACACCA
LOC_Os02g08490
Os.5574.1.S1_s_at--659--5411Chr02:4568063..4568087 (25 bp)
GAAGCTGTGGAGCATCTTGGCTCTC
LOC_Os02g08490
Os.5574.1.S1_s_at--918--10031Chr02:4567981..4568005 (25 bp)
TAGAGAACGAGATCGCCCTCAGTGT
LOC_Os02g08490
Os.5574.1.S1_s_at--1040--5571Chr02:4567893..4567917 (25 bp)
GAAAGGCCTTGCTCCACAGAAGAAG
LOC_Os02g08490
Os.5574.1.S1_s_at--315--9211Chr02:4567881..4567905 (25 bp)
TCCACAGAAGAAGCTTGTCCTCCAG
LOC_Os02g08490
Os.5574.1.S1_s_at--163--6231Chr02:4567804..4567828 (25 bp)
GATGGCATCGCCAAATCCTGTACCA
LOC_Os02g08490
Os.5574.1.S1_s_at--58--971Chr02:4567737..4567761 (25 bp)
AGGAGCTGCTAGTTCGGCATGTTCC
LOC_Os02g08490
Os.5574.1.S1_s_at--618--731Chr02:4567719..4567743 (25 bp)
ATGTTCCCACTTCTGAGCTTTCATA
LOC_Os02g08490
Target Sequence 
TGAGTACATTGTATTCCAGCCGCTGGACACCACAGAGATAAATCGCATCGTGGAGATCCAGCTGAACCGAGTCAAGAACC
GGCTGAGGCAACAGAAGATTCATCTGCAGTACACACCAGAAGCTGTGGAGCATCTTGGCTCTCTCGGCTTTGACCCTAAC
TACGGNTGCTAGGCCTGTNAAGAGGGTGATCCAGCAGATGGTAGAGAACGAGATCGCCCTCAGTGTCCTGAAGGGCGACT
TCAAAGAAGACGACACCGTCCTCGTCGACGTNAGCTCCGTGGCGATCGCGAAAGGCCTTGCTCCACAGAAGAAGCTTGTC
CTCCAGAGGTTAGAGAATGCAAACTTAGAGTTAGTCGCCAATGACTAGTTAGTTACACGATGGCATCGCCAAATCCTGTA
CCAGGTTTGAGGTTCCCCCTCGTAGTAGATGTTTTCAGCAGCTGCAGGAGCTGCTAGTTCGGCATGTTCCCACTTCTGAG
CTTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5574.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis