Browse Element(s) Details


Os.18010.1.S1_at

Description gb:AK121784.1
DB_XREF= gi:37991407
TID=Os.18010.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094A11, full insert sequence.
FL= gb:AK121784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0848011/11Ubiquitin fusion degradation protein UFD1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08440Os.12032.1.S1_at11/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08440OsAffx.24166.1.S1_at9/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed
LOC_Os02g08500Os.27847.1.S1_at11/112+4573823..4578355myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18010.1.S1_at--172--5171Chr02:4565841..4565865 (25 bp)
GAACCAAAGTTCATCCCCTTTACTG
LOC_Os02g08480
Os.18010.1.S1_at--500--4651Chr02:4565876..4565900 (25 bp)
GCGTCTGGATGGGAAGGCTCCTAAA
LOC_Os02g08480
Os.18010.1.S1_at--206--551Chr02:4565921..4565945 (25 bp)
ATCCCCTGCAAAACGGCAAGCTAAT
LOC_Os02g08480
Os.18010.1.S1_at--196--391Chr02:4565981..4566005 (25 bp)
ATCACAGAGCAGTTCATCTCGTAAA
LOC_Os02g08480
Os.18010.1.S1_at--40--10331Chr02:4566023..4566047 (25 bp)
TTTTGGCCCTGGTGGGAACCGCACA
LOC_Os02g08480
Os.18010.1.S1_at--116--2251Chr02:4566313..4566337 (25 bp)
AAATTCTCAGCTTTTACAGGAAGGA
LOC_Os02g08480
Os.18010.1.S1_at--26--331Chr02:4566339..4566363 (25 bp)
ATACTCATTGAAGGGCTGATAGCCA
LOC_Os02g08480
Os.18010.1.S1_at--256--10351Chr02:4566427..4566451 (25 bp)
TTGTTTAGTTACCTCCTTGAAGCCT
LOC_Os02g08480
Os.18010.1.S1_at--670--10731Chr02:4566443..4566467 (25 bp)
TTGAAGCCTCTTTTGGTTGGACCAG
LOC_Os02g08480
Os.18010.1.S1_at--872--8091Chr02:4566461..4566485 (25 bp)
GGACCAGTGGCATCTTTGAATGTTT
LOC_Os02g08480
Os.18010.1.S1_at--711--10131Chr02:4566501..4566525 (25 bp)
TATGAATCATCCTCGTGCCAGCAAC
LOC_Os02g08480
Target Sequence 
GAACCAAAGTTCATCCCCTTTACTGGACCTGGGAGGCGTCTGGATGGGAAGGCTCCTAAAGATAAGGATGTATCAGCTTC
ATCCCCTGCAAAACGGCAAGCTAATGCAACAAACAGCGTGCAGCCCTCAACAGCNTCCACATCACAGAGCAGTTCATCTC
GTAAAACCACGGNAAAGCTTGTTTTTGGCCCTGGTGGGAACCGCACATCTAAGGAAACAGAAAAGGTGCCTGAAAAGGAA
CCGAAGGAGGATCCCAAGAAAGATGAACCGAAATTCTCAGCTTTTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCC
AGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCC
TTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCTCGTGCCAGC
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis