Browse Element(s) Details


Os.11111.1.S1_at

Description gb:AK111532.1
DB_XREF= gi:37988195
TID=Os.11111.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031M08, full insert sequence.
FL= gb:AK111613.1 gb:AK111532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0881011/11Phosphatidylinositol 3-kinase, root isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08780OsAffx.4279.1.S1_at10/115+4805303..4808732hypothetical protein
LOC_Os05g08790OsAffx.14597.1.S1_at11/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08790Os.36975.3.S1_x_at1/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08800OsAffx.14598.1.S1_at11/115+4815742..4817880expressed protein
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08820NANA5+4846102..4847230expressed protein
LOC_Os05g08830OsAffx.14600.1.S1_at11/115+4853930..4854130expressed protein
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11111.1.S1_at--1038--8551Chr05:4839630..4839654 (25 bp)
TGGATCGTCTTTTCTTCAGAGCCAT
LOC_Os05g08810
Os.11111.1.S1_at--485--10811Chr05:4839568..4839592 (25 bp)
TTGTACCCTAGCCTTGTTGTTGAAT
LOC_Os05g08810
Os.11111.1.S1_at--167--8071Chr05:4839021..4839045 (25 bp)
GGAGCAAATTTCTATGCACCAGCCC
LOC_Os05g08810
Os.11111.1.S1_at--1005--4351Chr05:4839003..4839027 (25 bp)
CCAGCCCCTGTGTTGTTATCAAATC
LOC_Os05g08810
Os.11111.1.S1_at--740--2511Chr05:4838978..4839002 (25 bp)
AACTTGTTACTGTATGGGACCCTGA
LOC_Os05g08810
Os.11111.1.S1_at--475--8191Chr05:4838949..4838973 (25 bp)
GGAAGAACCAATCCATCTGAGCACA
LOC_Os05g08810
Os.11111.1.S1_at--647--5211Chr05:4838554..4838578 (25 bp)
GAATTATCAAGTTTCCTCCTACACG
LOC_Os05g08810
Os.11111.1.S1_at--561--5051Chr05:4838508..4838532 (25 bp)
GCAGCTGGTCTGGAAATTTCGGTTC
LOC_Os05g08810
Os.11111.1.S1_at--247--3131Chr05:4838494..4838518 (25 bp)
AATTTCGGTTCTCTTTGATGTCTGA
LOC_Os05g08810
Os.11111.1.S1_at--138--1551Chr05:4837279..4837303 (25 bp)
AGCTTCTCTCACCAGACTTTGAAAG
LOC_Os05g08810
Os.11111.1.S1_at--48--8031Chr05:4837092..4837114 (23 bp)
GGAGGTTCGAGCTTATGCCGTCAAC
LOC_Os05g08810
Target Sequence 
TGGATCGTCTTTTCTTCAGAGCCATGGACAAAGCTAAGGAGAAGTGTGAAAGAACTGAAAATTTGTACCCTAGCCTTGTT
GTTGAATTTTGCAGTTTTGAACACAGAGTTGTCTTCCAGGAATCTGGAGCAAATTTCTATGCACCAGCCCCTGTGTTGTT
ATCAAATCAACTTGTTACTGTATGGGACCCTGAACTAGGAAGAACCAATCCATCTGAGCACAAACAGTTAAAGCTTGCAA
GGAGCCTAACTCGTGGAATAATTGATAAAGATCTGAAACCAAGCTCAAATGAGCGAAAGTGTCTGCAAAGAATTATCAAG
TTTCCTCCTACACGCTCTTTACAAGTGGATGAGAAGCAGCTGGTCTGGAAATTTCGGTTCTCTTTGATGTCTGAGAAGAA
AGCTCTTACAAAGTTTGTTCGTGCAGTGGACTGGAGCGATATCCAAGAAGCTAAACAAGCTGTTGAATTGATTAGAAAGT
GGGAAACAATTGATGTGGCTGATGCATTAGAGCTTCTCTCACCAGACTTTGAAAGTGAGGAGGTTCGAGCTTATGCCGTC
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis