Browse Element(s) Details


OsAffx.14600.1.S1_at

Description tigr:9633.m00785
TID=OsAffx.14600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08820NANA5+4846102..4847230expressed protein
LOC_Os05g08830OsAffx.14600.1.S1_at11/115+4853930..4854130expressed protein
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed
LOC_Os05g08860Os.51345.1.S1_at11/115+4873130..4873834expressed protein
LOC_Os05g08860Os.6152.1.S1_at1/115+4873130..4873834expressed protein
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14600.1.S1_at--503--4811Chr05:4853965..4853989 (25 bp)
GCTCTCTGGGCGACGAAGTGTGAAA
LOC_Os05g08830
OsAffx.14600.1.S1_at--519--4611Chr05:4853974..4853998 (25 bp)
GCGACGAAGTGTGAAAGGTGATCAT
LOC_Os05g08830
OsAffx.14600.1.S1_at--838--7451Chr05:4853982..4854006 (25 bp)
GTGTGAAAGGTGATCATGACCATCC
LOC_Os05g08830
OsAffx.14600.1.S1_at--890--8671Chr05:4853983..4854007 (25 bp)
TGTGAAAGGTGATCATGACCATCCG
LOC_Os05g08830
OsAffx.14600.1.S1_at--487--7351Chr05:4853984..4854008 (25 bp)
GTGAAAGGTGATCATGACCATCCGC
LOC_Os05g08830
OsAffx.14600.1.S1_at--430--8971Chr05:4853985..4854009 (25 bp)
TGAAAGGTGATCATGACCATCCGCA
LOC_Os05g08830
OsAffx.14600.1.S1_at--910--5571Chr05:4853986..4854010 (25 bp)
GAAAGGTGATCATGACCATCCGCAC
LOC_Os05g08830
OsAffx.14600.1.S1_at--999--2311Chr05:4853987..4854011 (25 bp)
AAAGGTGATCATGACCATCCGCACG
LOC_Os05g08830
OsAffx.14600.1.S1_at--889--2891Chr05:4853988..4854012 (25 bp)
AAGGTGATCATGACCATCCGCACGG
LOC_Os05g08830
OsAffx.14600.1.S1_at--561--3931Chr05:4854055..4854079 (25 bp)
CGGCAAGGCGGTGGACCAGGCTGTC
LOC_Os05g08830
OsAffx.14600.1.S1_at--907--8531Chr05:4854066..4854090 (25 bp)
TGGACCAGGCTGTCGCGTACGCGCT
LOC_Os05g08830
Target Sequence 
GCTCTCTGGGCGACGAAGTGTGAAAGGTGATCATGACCATCCGCACGGCGGCGGCGCGCCGGCGACGGCGGCGACGGCGA
GGTGGATCGACGGCAAGGCGGTGGACCAGGCTGTCGCGTACGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis