Browse Element(s) Details


Os.51345.1.S1_at

Description gb:AK062607.1
DB_XREF= gi:32972625
TID=Os.51345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A04, full insert sequence.
FL= gb:AK062607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0886011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08830OsAffx.14600.1.S1_at11/115+4853930..4854130expressed protein
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed
LOC_Os05g08860Os.51345.1.S1_at11/115+4873130..4873834expressed protein
LOC_Os05g08860Os.6152.1.S1_at1/115+4873130..4873834expressed protein
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51345.1.S1_at--1084--871Chr05:4873565..4873589 (25 bp)
AGGCCTGCCGCCATTTCGTCCTATT
LOC_Os05g08860
Os.51345.1.S1_at--813--191Chr05:4873577..4873601 (25 bp)
ATTTCGTCCTATTCCGAGCTGGATA
LOC_Os05g08860
Os.51345.1.S1_at--218--7271Chr05:4873582..4873606 (25 bp)
GTCCTATTCCGAGCTGGATACTTGC
LOC_Os05g08860
Os.51345.1.S1_at--564--8551Chr05:4873596..4873620 (25 bp)
TGGATACTTGCAAGCACGAGCAGGC
LOC_Os05g08860
Os.51345.1.S1_at--502--1531Chr05:4873614..4873638 (25 bp)
AGCAGGCGTCGTCCAAGCTCGATCA
LOC_Os05g08860
Os.51345.1.S1_at--853--9391Chr05:4873622..4873646 (25 bp)
TCGTCCAAGCTCGATCAGATCCTAT
LOC_Os05g08860
Os.51345.1.S1_at--1031--4791Chr05:4873630..4873654 (25 bp)
GCTCGATCAGATCCTATAACAAAAG
LOC_Os05g08860
Os.51345.1.S1_at--254--3212Chr05:4873695..4873719 (25 bp)
CAATGGAAATTTAGGCTGTGTTCTT
LOC_Os05g08860
Os.51345.1.S1_at--873--8796Chr12:26227279..26227303 (25 bp)
TGTTCTTTCCTAGGTGATCTGGGTG
NONE
Os.51345.1.S1_at--833--9231Chr05:4873720..4873744 (25 bp)
TCCTAGGTGATCTGGGTGATTGTCA
LOC_Os05g08860
Os.51345.1.S1_at--99--6611Chr05:4873737..4873761 (25 bp)
GATTGTCACTGAGTTTTATTTCGTT
LOC_Os05g08860
Target Sequence 
AGGCCTGCCGCCATTTCGTCCTATTCCGAGCTGGATACTTGCAAGCACGAGCAGGCGTCGTCCAAGCTCGATCAGATCCT
ATAACAAAAGATTTGGGGAAGAGGAGCTTAATGTTTAATCTTGTAGTATTCAATGGAAATTTAGGCTGTGTTCTTTCCTA
GGTGATCTGGGTGATTGTCACTGAGTTTTATTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis