Browse Element(s) Details


Os.11179.1.S1_at

Description gb:CB647801
DB_XREF= gi:29642794
DB_XREF=OSJNEb10O07.r
CLONE=OSJNEb10O07
TID=Os.11179.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11179 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180450.1 (A.thaliana) putative RING zinc finger ankyrin protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1678011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11179.1.S1_at--495--411Chr03:9276304..9276328 (25 bp)
ATCATGGGCAGCATTGCGTCGTCGA
LOC_Os03g16780
Os.11179.1.S1_at--1125--5731Chr03:9276264..9276288 (25 bp)
GACGGCGAACCGACAGCAGCGAACA
LOC_Os03g16780
Os.11179.1.S1_at--1156--10011Chr03:9276220..9276244 (25 bp)
TAGCACGCAACTCATCGGATCGAGT
LOC_Os03g16780
Os.11179.1.S1_at--932--6091Chr03:9276199..9276223 (25 bp)
GAGTCAGAGTGGACACGATCATCCT
LOC_Os03g16780
Os.11179.1.S1_at--1132--3531Chr03:9276180..9276204 (25 bp)
CATCCTGGTACAAGCCATTGTCGTC
LOC_Os03g16780
Os.11179.1.S1_at--18--10071Chr03:9276148..9276172 (25 bp)
TAGTCTTCTTCAACCGATCGGCAAA
LOC_Os03g16780
Os.11179.1.S1_at--1042--6391Chr03:9276133..9276157 (25 bp)
GATCGGCAAATGAGCTACTATTTTT
LOC_Os03g16780
Os.11179.1.S1_at--448--3551Chr03:9276063..9276087 (25 bp)
CATCTGTGTAGATTTGAGCCATGCT
LOC_Os03g16780
Os.11179.1.S1_at--336--5871Chr03:9276048..9276072 (25 bp)
GAGCCATGCTGTATTACGCTGTGTA
LOC_Os03g16780
Os.11179.1.S1_at--1040--7431Chr03:9276028..9276052 (25 bp)
GTGTAAATCCAAATAAGCAGTCCTT
LOC_Os03g16780
Os.11179.1.S1_at--542--4331Chr03:9275987..9276011 (25 bp)
CCAGCACTTCCAGTGGAGTTCTTGA
LOC_Os03g16780
Target Sequence 
ATCATGGGCAGCATTGCGTCGTCGATCGGGAAGATGGNCAGACGGCGAACCGACAGCAGCGAACACGTCGACGTCGACAA
GCCCTAGCACGCAACTCATCGGATCGAGTCAGAGTGGACACGATCATCCTGGTACAAGCCATTGTCGTCGTCGTNCGTAG
TCTTCTTCAACCGATCGGCAAATGAGCTACTATTTTTTGTAGATTATTACTATTATTTTTTCCTCAAGAAAATGAGCTAT
TCCATCTGTGTAGATTTGAGCCATGCTGTATTACGCTGTGTAAATCCAAATAAGCAGTCCTTGCATGCTTGGTAGCCCCC
AGCACTTCCAGTGGAGTTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis