Browse Element(s) Details


Os.11204.1.S1_at

Description gb:AK070129.1
DB_XREF= gi:32980153
TID=Os.11204.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence.
FL= gb:AK070129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5200011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51970Os.14574.1.S1_at11/114+30633216..30636973major facilitator superfamily protein, expressed
LOC_Os04g51980NANA4+30641585..30644054Transferase family protein
LOC_Os04g51990NANA4+30650588..30652665Transferase family protein, expressed
LOC_Os04g52000Os.11204.1.S1_at11/114+30656143..30660431Protein phosphatase 2C containing protein, expressed
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11204.1.S1_at--938--891Chr04:30657031..30657055 (25 bp)
AGGCGCACTTGAGTTCAGAACCTGA
LOC_Os04g52000
Os.11204.1.S1_at--552--2631Chr04:30657013..30657037 (25 bp)
AACCTGATGTTAGGCATGTACCAAT
LOC_Os04g52000
Os.11204.1.S1_at--750--271Chr04:30656978..30657002 (25 bp)
ATAGAGTTCGTCATACTTGCCAGCG
LOC_Os04g52000
Os.11204.1.S1_at--1069--2631Chr04:30656607..30656631 (25 bp)
AACCAGGAAGCCGTCGATCTTGTGA
LOC_Os04g52000
Os.11204.1.S1_at--215--5711Chr04:30656549..30656573 (25 bp)
GACTGACGACCGAAGCGCTTGCGAG
LOC_Os04g52000
Os.11204.1.S1_at--529--5151Chr04:30656464..30656488 (25 bp)
GCAACATTGTCTCTGCGTTTCTCTT
LOC_Os04g52000
Os.11204.1.S1_at--800--6831Chr04:30656448..30656472 (25 bp)
GTTTCTCTTCGTTCCGATTGAATTT
LOC_Os04g52000
Os.11204.1.S1_at--1053--8811Chr04:30656379..30656403 (25 bp)
TGTTGTGAACAGACCCTAGAGATGA
LOC_Os04g52000
Os.11204.1.S1_at--678--7491Chr04:30656268..30656292 (25 bp)
GTGGTGATTCGTCTGTGCATACATA
LOC_Os04g52000
Os.11204.1.S1_at--960--3471Chr04:30656205..30656229 (25 bp)
CAGGTTGTTGCCGTTGTGTACATAC
LOC_Os04g52000
Os.11204.1.S1_at--187--6951Chr04:30656145..30656169 (25 bp)
GTAGTAGTCCCAGTCATGTGTCATG
LOC_Os04g52000
Target Sequence 
AGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGAT
GGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCG
ACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCG
CTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATA
GTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTT
CAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTG
TTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTACATACATTGTTGCTTGGTTTTGGCTGTGAGTTGTGAA
ATGGTAGTAGTCCCAGTCATGTGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis