Browse Element(s) Details


Os.11308.1.S1_at

Description gb:AU071158
DB_XREF= gi:5039048
DB_XREF=AU071158
CLONE=R10831_2Z
TID=Os.11308.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11308 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567352.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3520011/11molybdopterin converting factor, subunit 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed
LOC_Os02g35200Os.11308.1.S1_at11/112+21159188..21159817molybdopterin converting factor, subunit 1 family protein, expressed
LOC_Os02g35210OsAffx.2866.1.S1_at11/112+21160810..21164084NB-ARC domain containing protein
LOC_Os02g35220Os.12954.1.S1_at1/112+21166531..21168014expressed protein
LOC_Os02g35230Os.51699.1.S1_at11/112+21169120..21174303expressed protein
LOC_Os02g35230Os.17676.2.S1_at1/112+21169120..21174303expressed protein
LOC_Os02g35240NANA2+21178266..21178778AP2 domain containing protein
LOC_Os02g35250NANA2+21183316..21183816hypothetical protein
LOC_Os02g35260NANA2+21184800..21185279hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0006790biological_processsulfur metabolism
GO:0009734biological_processauxin mediated signaling pathway
GO:0018315biological_processmolybdenum incorporation into molybdenum-molybdopterin complex
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11308.1.S1_at--1124--9631Chr02:21159534..21159558 (25 bp)
TCAGCGGCGGCTGACAATCTTTCCA
LOC_Os02g35200
Os.11308.1.S1_at--669--8331Chr02:21159542..21159566 (25 bp)
GGCTGACAATCTTTCCACTTCTCCA
LOC_Os02g35200
Os.11308.1.S1_at--1021--10292Chr02:21159655..21159679 (25 bp)
TTTCCTGATACAATTTCAATCATAC
LOC_Os02g35200
Os.11308.1.S1_at--957--9731Chr02:21159670..21159694 (25 bp)
TCAATCATACAATATACGCAAGTTT
LOC_Os02g35200
Os.11308.1.S1_at--1092--1191Chr02:21159690..21159714 (25 bp)
AGTTTGAGTAATAAGCATCGCCTGT
LOC_Os02g35200
Os.11308.1.S1_at--829--10771Chr02:21159693..21159717 (25 bp)
TTGAGTAATAAGCATCGCCTGTTTT
LOC_Os02g35200
Os.11308.1.S1_at--181--371Chr02:21159725..21159749 (25 bp)
ATAATTGTTACTTGGCATCGTTGTC
LOC_Os02g35200
Os.11308.1.S1_at--728--10471Chr02:21159732..21159756 (25 bp)
TTACTTGGCATCGTTGTCCTTCAAT
LOC_Os02g35200
Os.11308.1.S1_at--67--8511Chr02:21159737..21159761 (25 bp)
TGGCATCGTTGTCCTTCAATCATGT
LOC_Os02g35200
Os.11308.1.S1_at--72--4051Chr02:21159743..21159767 (25 bp)
CGTTGTCCTTCAATCATGTTGATGA
LOC_Os02g35200
Os.11308.1.S1_at--35--6331Chr02:21159763..21159787 (25 bp)
GATGAATCTTGAATCACATTTCGAT
LOC_Os02g35200
Target Sequence 
TCAGCGGCGGCTGACAATCTTTCCACTTCTCCACCACCCTCCCCCCAATTCGAAGACACGGGGGCGCAAAGAGAGAAGAA
ACCACCGGTTCTTTCTTTTGCTTTCCTCTTCTTTCTACTTGTTTCCTGATACAATTTCAATCATACAATATACGCAAGTT
TGAGTAATAAGCATCGCCTGTTTTNGCGATGATAATTGTTACTTGGCATCGTTGTCCTTCAATCATGTTGATGAATCTTG
AATCACATTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis