Browse Element(s) Details


OsAffx.2866.1.S1_at

Description tigr:9630.m03358
TID=OsAffx.2866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3521011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed
LOC_Os02g35200Os.11308.1.S1_at11/112+21159188..21159817molybdopterin converting factor, subunit 1 family protein, expressed
LOC_Os02g35210OsAffx.2866.1.S1_at11/112+21160810..21164084NB-ARC domain containing protein
LOC_Os02g35220Os.12954.1.S1_at1/112+21166531..21168014expressed protein
LOC_Os02g35230Os.51699.1.S1_at11/112+21169120..21174303expressed protein
LOC_Os02g35230Os.17676.2.S1_at1/112+21169120..21174303expressed protein
LOC_Os02g35240NANA2+21178266..21178778AP2 domain containing protein
LOC_Os02g35250NANA2+21183316..21183816hypothetical protein
LOC_Os02g35260NANA2+21184800..21185279hypothetical protein
LOC_Os02g35270OsAffx.10637.4.S1_s_at7/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.3.S1_s_at5/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.1.S1_s_at3/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.32056.1.S1_x_at2/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2866.1.S1_at--45--9791Chr02:21163517..21163541 (25 bp)
TAAGTGTCTCAGTGTGATTCCAAAC
LOC_Os02g35210
OsAffx.2866.1.S1_at--5--6591Chr02:21163532..21163556 (25 bp)
GATTCCAAACTGGTTGGGCTCACTT
LOC_Os02g35210
OsAffx.2866.1.S1_at--726--8651Chr02:21163546..21163570 (25 bp)
TGGGCTCACTTATCAACCTATCTTA
LOC_Os02g35210
OsAffx.2866.1.S1_at--462--7211Chr02:21163578..21163602 (25 bp)
GTCGATGTTCTTCGAGCGGCACAAA
LOC_Os02g35210
OsAffx.2866.1.S1_at--114--7911Chr02:21163610..21163634 (25 bp)
GGATATCCTTGGTGAGCTACCTAAC
LOC_Os02g35210
OsAffx.2866.1.S1_at--138--9811Chr02:21163631..21163655 (25 bp)
TAACCTTCTCTTTCTCAGGCTAGGC
LOC_Os02g35210
OsAffx.2866.1.S1_at--1090--8291Chr02:21163648..21163672 (25 bp)
GGCTAGGCTCAGAAACAGCTCCACA
LOC_Os02g35210
OsAffx.2866.1.S1_at--685--2751Chr02:21163672..21163696 (25 bp)
AAGAAAGACTCATCATCCGCGACCA
LOC_Os02g35210
OsAffx.2866.1.S1_at--163--9731Chr02:21163757..21163781 (25 bp)
TCAAGTGGGCGCTATGCCAAGGCTT
LOC_Os02g35210
OsAffx.2866.1.S1_at--135--6551Chr02:21163839..21163863 (25 bp)
GATTTTGGTATCCAACACCTGTTGT
LOC_Os02g35210
OsAffx.2866.1.S1_at--634--2771Chr02:21163952..21163976 (25 bp)
AAGAGCACTACCAAACAATCCCTTG
LOC_Os02g35210
Target Sequence 
TAAGTGTCTCAGTGTGATTCCAAACTGGTTGGGCTCACTTATCAACCTATCTTACATCAACGTCGATGTTCTTCGAGCGG
CACAAAGAGATCTGGATATCCTTGGTGAGCTACCTAACCTTCTCTTTCTCAGGCTAGGCTCAGAAACAGCTCCACAAGAA
AGACTCATCATCCGCGACCAGTGTTTCGAACACTTAAAGGAATTCAAATTTATTTGTTTGCTCACAGAGGGACTGGAATT
TCAAGTGGGCGCTATGCCAAGGCTTGAAAGACTTTGCTTTCAGTTTGTAGCATTGGAAATCATTTATGCAACTGGTGGTT
TTGATTTTGGTATCCAACACCTGTTGTCCCTCAAGGAAGCTTTTGTCAAGATAGACTGTTTTGCTGCTTGGGCTGGAGTA
GGAAATGCTGCTGAGGCGGCGATCAGAAATTCAGCAAGAGCACTACCAAACAATCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis