Browse Element(s) Details


Os.11330.2.S1_x_at

Description gb:AB029446.1
DB_XREF= gi:5381215
TID=Os.11330.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.11330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plasma membrane intrinsic protein (OJ1047_A06.17), mRNA
DEF=Oryza sativa rwc-2 mRNA for water channel protein, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g266906/11aquaporin PIP2.4, putative, expressed
LOC_Os01g711001/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26670OsAffx.22369.1.S1_at11/117+15384182..15384572hypothetical protein
LOC_Os07g26690Os.11330.1.S1_a_at11/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.1.S1_x_at8/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.2.S1_x_at6/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.31191.2.S1_x_at4/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0006952biological_processdefense response
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11330.2.S1_x_at--59--4391NONE
GCCAATCGGCTTCGCGTGGTTCATG
NONE
Os.11330.2.S1_x_at--1054--4651NONE
GCGTGGTTCATGGTCCAACTGGCGA
NONE
Os.11330.2.S1_x_at--1064--3911Chr07:15407461..15407485 (25 bp)
CGGCCGTCATCTTCAACAACGAGAA
LOC_Os07g26690
Os.11330.2.S1_x_at--388--9711NONE
TCAACAACGAGAAGGCCTGGCACAA
NONE
Os.11330.2.S1_x_at--480--3231NONE
CAACCAATGGATCTTCTGGGTCGGC
NONE
Os.11330.2.S1_x_at--882--3811Chr07:15407718..15407742 (25 bp)
CTCCTTCAGGAGCAACGCGTGATAT
LOC_Os07g26690
Os.11330.2.S1_x_at--138--5391NONE
GAAGCAATGGCCATGATGATCGATG
NONE
Os.11330.2.S1_x_at--784--6391Chr07:15407810..15407830 (21 bp)
GATCGATGATGAGTTCTACCGTGTT
LOC_Os07g26690
Os.11330.2.S1_x_at--802--3532Chr07:15407925..15407949 (25 bp)
CATCCATGTGTTTGTAATCTGTTTT
LOC_Os07g26690
Os.11330.2.S1_x_at--419--4071Chr07:15407955..15407979 (25 bp)
CGAGGGATGTCTCATGTGTTTAGCC
LOC_Os07g26690
Os.11330.2.S1_x_at--405--3511Chr07:15407967..15407991 (25 bp)
CATGTGTTTAGCCTGTACTCCCATT
LOC_Os07g26690
Target Sequence 
GCCAATCGGCTTCGCGTGGTTCATGGTCCAACTGGCGACGATCCCGATCACCGGCACCGGCATCAACCCGGCCAGGACCA
CCGGACCGGCCGTCATCTTCAACAACGAGAAGGCCTGGCACAACCAATGGATCTTCTGGGTCGGCCCGTTCGTCGGCGCC
GCCATCGCGGCGTTCTACCACCAGTACATCCTCCGGGCCGGCCCCATCAAGGCCCTCGGCTCCTTCAGGAGCAACGCGTG
ATATCAAGGGGTTCGAGAAGCCATTGTTGGGGGATAATGGCTGGAAGGCGTTGATGAAGCAATGGCCATGATGATCGATG
ATGAGTTCTACCGTGTTAAGATTCTCCCTTTTCAAAAAAAATTAAGTTCGCCGCNGNNNGTTTTNNTTNCAGCAGCTGCT
CCTCCTCCNTGCTTGTCGTGTGTGTGAAGTGAACATCCATGTGTTTGTAATCTGTTTTAAATCGAGGGATGTCTCATGTG
TTTAGCCTGTACTCCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11330.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis