Browse Element(s) Details


Os.11458.1.S1_at

Description gb:AK073681.1
DB_XREF= gi:32983704
TID=Os.11458.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054K18, full insert sequence.
FL= gb:AK073681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0484011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed
LOC_Os08g04830Os.14088.1.S1_at10/118+2421104..2424827expressed protein
LOC_Os08g04840Os.11458.1.S1_at11/118+2427488..2430411myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g04850Os.14491.2.S1_x_at6/118+2438279..2443440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04850Os.47463.1.S1_x_at5/118+2438279..2443440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04860NANA8+2445125..2448357transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11458.1.S1_at--734--6791Chr08:2429819..2429843 (25 bp)
GTTATCCAATGATGCTTCCTCCATA
LOC_Os08g04840
Os.11458.1.S1_at--280--3031Chr08:2429865..2429889 (25 bp)
AATGCCCTACTATGGTTATGTGCCT
LOC_Os08g04840
Os.11458.1.S1_at--64--8791Chr08:2429889..2429913 (25 bp)
TGTTTTCTATGCACCACCAGGAGCA
LOC_Os08g04840
Os.11458.1.S1_at--261--2431Chr08:2429958..2429982 (25 bp)
AAAACCTCCAGTGCACATCGATGAA
LOC_Os08g04840
Os.11458.1.S1_at--1015--511Chr08:2429974..2429998 (25 bp)
ATCGATGAACTCTACAGCATGTCCG
LOC_Os08g04840
Os.11458.1.S1_at--624--1531Chr08:2429989..2430013 (25 bp)
AGCATGTCCGAACTCAGCCTGAAGG
LOC_Os08g04840
Os.11458.1.S1_at--229--3491Chr08:2430081..2430105 (25 bp)
CAGGCAATCTGCTTTTCATGGAAAA
LOC_Os08g04840
Os.11458.1.S1_at--1022--8111Chr08:2430130..2430154 (25 bp)
GGACTGATTCCTGCAAAGTGATTCT
LOC_Os08g04840
Os.11458.1.S1_at--495--3071Chr08:2430201..2430225 (25 bp)
AATCATAAACCCCATGCTGCTGAAA
LOC_Os08g04840
Os.11458.1.S1_at--109--5431Chr08:2430283..2430307 (25 bp)
GAAGCCATGTATGTCCTGCGAGTAA
LOC_Os08g04840
Os.11458.1.S1_at--121--1551Chr08:2430334..2430358 (25 bp)
AGCATTTCTTTGTCGTTGTTTCTCA
LOC_Os08g04840
Target Sequence 
GTTATCCAATGATGCTTCCTCCATACTACCCACCGGCATTTGTTCCAATGCCCTACTATGGTTATGTGCCTGTTTTCTAT
GCACCACCAGGAGCAGTGCAAGCACAACATGAGGTTGTCAAGCCTGTGGCCGTGCACTCAAAACCTCCAGTGCACATCGA
TGAACTCTACAGCATGTCCGAACTCAGCCTGAAGGNCGAGGCTGGTGTGAAAAACGGCACTCCNTAATTCTCTGTTGCCT
NCNAAGACCAATTGGTAGACCAGACAGGCAATCTGCTTTTCATGGAAAAGGACCTTCTGATGGNCTCTTCAAATGGACTG
ATTCCTGCAAAGTGATTCTGCAGTAAAACATCCATTCATGTGTATCTAATGCTTAGAAGATAGTAAATCATAAACCCCAT
GCTGCTGAAATGGTGCTGTTGTACATGCAAAATGCTTTTACTGGTCATTTTAGTTTCATGTTTGGAGGAAGCCATGTATG
TCCTGCGAGTAAATTGACTTTTAGTTTGACAAAAATGTAGCATTTCTTTGTCGTTGTTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis