Browse Element(s) Details


Os.14088.1.S1_at

Description gb:AK108062.1
DB_XREF= gi:32993271
TID=Os.14088.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B03, full insert sequence.
FL= gb:AK108062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0483010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed
LOC_Os08g04830Os.14088.1.S1_at10/118+2421104..2424827expressed protein
LOC_Os08g04840Os.11458.1.S1_at11/118+2427488..2430411myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g04850Os.14491.2.S1_x_at6/118+2438279..2443440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04850Os.47463.1.S1_x_at5/118+2438279..2443440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04860NANA8+2445125..2448357transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14088.1.S1_at--823--8211Chr08:2423513..2423537 (25 bp)
GGAATATGTTTCTTCAGACTCTGCA
LOC_Os08g04830
Os.14088.1.S1_at--165--1011Chr08:2423423..2423447 (25 bp)
AGGATCTTCGTGTGTGTTACCACTG
LOC_Os08g04830
Os.14088.1.S1_at--647--6772Chr09:7081681..7081705 (25 bp)
GTTACCACTGCCACTTATATGTAGT
NONE
Os.14088.1.S1_at--659--6272Chr09:7081594..7081618 (25 bp)
GATGTCAAGTACTTTCAGGGCATGA
NONE
Os.14088.1.S1_at--495--2255Chr11:6204302..6204325 (24 bp)
AAATTCAAACTTCTTGCAGCTGCAT
NONE
Os.14088.1.S1_at--84--5072Chr09:7081537..7081561 (25 bp)
GCAGCTGCATTTGACACTAGATTCC
NONE
Os.14088.1.S1_at--535--2031NONE
ACTAGATTCCAATGGCCAGCGGATG
NONE
Os.14088.1.S1_at--524--2752Chr08:2421366..2421390 (25 bp)
AAGAACATGGGACTTGCTCCTGCAT
LOC_Os08g04830
Os.14088.1.S1_at--43--652Chr02:10524143..10524654 (25 bp)
ATGCAGTTGTGATGCCTCTGATGGA
NONE
Os.14088.1.S1_at--1041--4952Chr08:2421296..2421320 (25 bp)
GCATAGCACCAAGATCTGGCGTCGA
LOC_Os08g04830
Os.14088.1.S1_at--1011--2952Chr08:2421171..2421195 (25 bp)
AATGGCGCCATAATTCTTTTTCCCG
LOC_Os08g04830
Target Sequence 
GGAATATGTTTCTTCAGACTCTGCAGCTCGGGAAGCAATTCTAACGAACATTCTGCACAATGAGAAGTATCGATCTGATA
ACTTTATTCTAGGATCTTCGTGTGTGTTACCACTGCCACTTATATGTAGTACTTTTGCATCAATTGTCCATCATTTTAGT
ATATACATTTGAGGAACTGATTTGATGTTATTGATGTCAAGTACTTTCAGGGCATGAGAGCACAGGATACCAGCAAATTC
AAACTTCTTGCAGCTGCATTTGACACTAGATTCCAATGGCCAGCGGATGAATCATCAGGCTCAACAAGATTTGTGAATGA
CGTCGTTGTAGCAGATGTATTGTCCAAGAACATGGGACTTGCTCCTGCATCATGCAGTTGTGATGCCTCTGATGGAGGAA
TCATGCTGTTGTTTGGCATAGCACCAAGATCTGGCGTCGATGCCGGTGCTTGATAAGAGAGATTAATTTATCAGGATGCT
AATGCATGTTTAGATATGAGTTGTTTGGATGCTGGAGGATTTAACGGGAGAACTGAGACAAATGGCGCCATAATTCTTTT
TCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis