Browse Element(s) Details


OsAffx.16830.1.S1_at

Description tigr:9636.m00406
TID=OsAffx.16830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0480011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04770OsAffx.29036.1.S1_at11/118+2375811..2378817AMP-binding enzyme family protein, expressed
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed
LOC_Os08g04830Os.14088.1.S1_at10/118+2421104..2424827expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009901biological_processanther dehiscence
GO:0010152biological_processpollen maturation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16830.1.S1_at--906--3791Chr08:2400588..2400612 (25 bp)
CTCGCCGAGCTTGTCGGAGATGGTC
LOC_Os08g04800
OsAffx.16830.1.S1_at--694--4231Chr08:2400592..2400616 (25 bp)
CCGAGCTTGTCGGAGATGGTCGTCT
LOC_Os08g04800
OsAffx.16830.1.S1_at--756--7191Chr08:2400610..2400634 (25 bp)
GTCGTCTCCGAGGTACGGAGGCTAC
LOC_Os08g04800
OsAffx.16830.1.S1_at--55--9291Chr08:2400616..2400640 (25 bp)
TCCGAGGTACGGAGGCTACTGACAA
LOC_Os08g04800
OsAffx.16830.1.S1_at--597--1011Chr08:2400620..2400644 (25 bp)
AGGTACGGAGGCTACTGACAAAGTA
LOC_Os08g04800
OsAffx.16830.1.S1_at--1137--4231Chr08:2400746..2400770 (25 bp)
CCGTGGCCGTGTTCTCCTTCGGTGG
LOC_Os08g04800
OsAffx.16830.1.S1_at--644--4151Chr08:2400819..2400843 (25 bp)
CGCGCGCGTGCTCCGGGTGGTGAAC
LOC_Os08g04800
OsAffx.16830.1.S1_at--568--9351Chr08:2401009..2401033 (25 bp)
TCGCATTGCCCGTTCCGGGACAACG
LOC_Os08g04800
OsAffx.16830.1.S1_at--105--4031Chr08:2401019..2401043 (25 bp)
CGTTCCGGGACAACGCCAAGCGGAG
LOC_Os08g04800
OsAffx.16830.1.S1_at--165--9271Chr08:2401055..2401079 (25 bp)
TCCTCGAGAACCAGGGCGGCAACGT
LOC_Os08g04800
OsAffx.16830.1.S1_at--1142--1571Chr08:2401085..2401109 (25 bp)
AGCTCTACATCAGCAAGGCCATGGA
LOC_Os08g04800
Target Sequence 
CTCGCCGAGCTTGTCGGAGATGGTCGTCTCCGAGGTACGGAGGCTACTGACAAAGTACGAGGGGGAGGAGGTGAGCATCA
CGGTGACCGGGCACAGCCTGGGCGCGGCGCTGGCGGTGCTGATCGCCGACGAGCTCGCCGGCCTCGGCGCGCCGGCGCCC
GTGGCCGTGTTCTCCTTCGGTGGCCCACGCGTGGGCGACCGCGCGTTCGCGTCGCGCGTCGAGGCGCGCGGCGCGCGCGT
GCTCCGGGTGGTGAACGCGCACGACGTCGTGCCGCGGTTCCCGCCGCCGTCGCGCTACGCCGACGTGGGGCGGGAGCTCC
GGCTGGACAGCCGCGCGTCGCCGTACCTCCGGCCGGACGCCGACGCGGCGTGCTGCCACGACCTGGAGGCGTACATCCAC
CTCGTCGACGGCTTCCTCGGCTCGCATTGCCCGTTCCGGGACAACGCCAAGCGGAGCATCCTCCGCCTCCTCGAGAACCA
GGGCGGCAACGTCAAGCAGCTCTACATCAGCAAGGCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis