Browse Element(s) Details


Os.7610.1.S1_a_at

Description gb:AK120532.1
DB_XREF= gi:37990155
TID=Os.7610.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013079C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128B21, full insert sequence.
FL= gb:AK120532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0478011/11amine oxidase, flavin-containing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04740OsAffx.16829.1.S1_s_at11/118+2359067..2359707expressed protein
LOC_Os08g04750NANA8+2362664..2363416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04760NANA8+2365652..2368088hypothetical protein
LOC_Os08g04770OsAffx.29036.1.S1_at11/118+2375811..2378817AMP-binding enzyme family protein, expressed
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7610.1.S1_a_at--707--10411Chr08:2379765..2379789 (25 bp)
TTATTTATACGCCACCGTCTCGCAA
LOC_Os08g04780
Os.7610.1.S1_a_at--1050--8571Chr08:2379658..2379682 (25 bp)
TGGGTTACGACAGTACATACGATGT
LOC_Os08g04780
Os.7610.1.S1_a_at--374--7131Chr08:2379628..2379652 (25 bp)
GTCATCTGATTTCTAGCATCTCGAG
LOC_Os08g04780
Os.7610.1.S1_a_at--694--4971Chr08:2379613..2379637 (25 bp)
GCATCTCGAGAGCTCAGAAAGCCAG
LOC_Os08g04780
Os.7610.1.S1_a_at--133--6671Chr08:2379582..2379606 (25 bp)
GTTGCAGGGACCGAAGAGCTTGAAA
LOC_Os08g04780
Os.7610.1.S1_a_at--290--2611Chr08:2379558..2379582 (25 bp)
AACCGGACTTTGATCTGTACCGCTA
LOC_Os08g04780
Os.7610.1.S1_a_at--279--6991Chr08:2379542..2379566 (25 bp)
GTACCGCTACTTTATTCTTGTTTGT
LOC_Os08g04780
Os.7610.1.S1_a_at--234--2431Chr08:2379479..2379503 (25 bp)
AAAACTGGCTCATAGATTGTTCTCT
LOC_Os08g04780
Os.7610.1.S1_a_at--94--6611Chr08:2379465..2379489 (25 bp)
GATTGTTCTCTAGTGTGCAAACTTT
LOC_Os08g04780
Os.7610.1.S1_a_at--721--8251Chr08:2379432..2379456 (25 bp)
GGCAGGAAAACCAAGATCCTCCCTG
LOC_Os08g04780
Os.7610.1.S1_a_at--134--571Chr08:2379417..2379441 (25 bp)
ATCCTCCCTGCCATTTGTAACATGG
LOC_Os08g04780
Target Sequence 
TTATTTATACGCCACCGTCTCGCAAGAGCANGCAACTGAACTANTGGAATGNGACNATGATAAAAGTAGGATAGCAGTTC
TATGCAAAGATCTTGGTGTTAAACTAATGGGTTACGACAGTACATACGATGTATGTAGTCATCTGATTTCTAGCATCTCG
AGAGCTCAGAAAGCCAGGAAAAGGTTGCAGGGACCGAAGAGCTTGAAAACCGGACTTTGATCTGTACCGCTACTTTATTC
TTGTTTGTAGAAAAGAACCCCATATTTTCTCTTTTGGTTTGGGCCAAAAACTGGCTCATAGATTGTTCTCTAGTGTGCAA
ACTTTAGACGTGGGGCAGGAAAACCAAGATCCTCCCTGCCATTTGTAACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7610.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis